def test_per_channel_ingest_neg_x_extent_offset(self):
now = datetime.now().strftime("%Y%m%d-%H%M%S%f")
self.args.experiment = 'test_neg_offset_' + now
self.args.channel = 'def_files'
self.args.datatype = 'uint16'
self.args.x_extent = [-1000, 0]
self.args.offset_extents = True
self.args.extension = 'png'
self.args.channels_list_file = 'tests/channels.test.txt'
channels = read_channel_names(self.args.channels_list_file)
# assertions are inside ingest_test_per_channel
# this is to create resources only:
self.args.create_resources = True
self.ingest_test_per_channel(self.args, channels)
self.args.create_resources = False
self.ingest_test_per_channel(self.args, channels)
# cleanup
for ch in channels:
ch_args = self.args
ch_args.channel = ch
ingest_job = IngestJob(ch_args)
os.remove(ingest_job.get_log_fname())
boss_res_params = BossResParams(ingest_job)
boss_res_params.get_resources(get_only=True)
boss_res_params.rmt.delete_project(boss_res_params.ch_resource)
if len(channels) > 0:
boss_res_params.rmt.delete_project(boss_res_params.exp_resource)
def test_per_channel_ingest(self):
self.args.datatype = 'uint16'
self.args.extension = 'tif'
self.args.channels_list_file = 'tests/channels.test.txt'
channels = read_channel_names(self.args.channels_list_file)
# assertions are inside ingest_test_per_channel
# this is to create resources only:
# self.ingest_test_per_channel(self.args, channels)
self.args.create_resources = False
self.ingest_test_per_channel(self.args, channels)
def test_per_channel_ingest_neg_x_extent_no_offset(self):
self.args.experiment = 'test_neg_extent_no_offset'
self.args.channel = 'def_files'
self.args.x_extent = [-1000, 0]
self.args.offset_extents = False
self.args.channels_list_file = 'tests/channels.test.txt'
channels = read_channel_names(self.args.channels_list_file)
# assertions are inside ingest_test_per_channel
# this is to create resources only:
with pytest.raises(ValueError):
self.ingest_test_per_channel(self.args, channels)
self.args.create_resources = False
with pytest.raises(ValueError):
self.ingest_test_per_channel(self.args, channels)
def test_read_channel_names_no_channel_file(self):
channels_path = 'tests/channels.not_found.txt'
with pytest.raises(FileNotFoundError):
read_channel_names(channels_path)
def test_read_channel_names(self):
channels_path = 'tests/channels.test.txt'
channels = read_channel_names(channels_path)
valid_channels = ['Channel1', 'Channel0']
assert valid_channels == channels