Python merge_gdf примеры использования

Пример #1

Файл: cellsim16pops_modified_ac_inh.py Проект: INM-6/hybridLFPy

#tic toc
tic = time()

######## Perform network simulation ############################################

##initiate nest simulation with only the point neuron network parameter class
networkParams = point_neuron_network_params()
nest_simulation.sli_run(parameters=networkParams,
                       fname='microcircuit.sli',
                       verbosity='M_WARNING')

#preprocess the gdf files containing spiking output, voltages, weighted and
#spatial input spikes and currents:
nest_output_processing.merge_gdf(networkParams,
                            raw_label=networkParams.spike_detector_label,
                            file_type='gdf',
                            fileprefix=params.networkSimParams['label'])
nest_output_processing.merge_gdf(networkParams,
                            raw_label=networkParams.voltmeter_label,
                            file_type='dat',
                            fileprefix='voltages')
nest_output_processing.merge_gdf(networkParams,
                            raw_label=networkParams.weighted_input_spikes_label,
                            file_type='dat',
                            fileprefix='population_input_spikes')
##spatial input currents
#nest_output_processing.create_spatial_input_spikes_hdf5(networkParams,
#                                        fileprefix='depth_res_input_spikes-')


#Create an object representation of the simulation output that uses sqlite3

Пример #2

Файл: cellsim16pops_modified_regular_exc.py Проект: lionelkusch/hybridLFPy

#tic toc
tic = time()

######## Perform network simulation ############################################

##initiate nest simulation with only the point neuron network parameter class
networkParams = point_neuron_network_params()
nest_simulation.sli_run(parameters=networkParams,
                       fname='microcircuit.sli',
                       verbosity='M_WARNING')

#preprocess the gdf files containing spiking output, voltages, weighted and
#spatial input spikes and currents:
nest_output_processing.merge_gdf(networkParams,
                            raw_label=networkParams.spike_detector_label,
                            file_type='gdf',
                            fileprefix=params.networkSimParams['label'])
nest_output_processing.merge_gdf(networkParams,
                            raw_label=networkParams.voltmeter_label,
                            file_type='dat',
                            fileprefix='voltages')
nest_output_processing.merge_gdf(networkParams,
                            raw_label=networkParams.weighted_input_spikes_label,
                            file_type='dat',
                            fileprefix='population_input_spikes')
##spatial input currents
#nest_output_processing.create_spatial_input_spikes_hdf5(networkParams,
#                                        fileprefix='depth_res_input_spikes-')


#Create an object representation of the simulation output that uses sqlite3