def test_deep_iteration():
root = t = Tree(0)
for i in range(1, sys.getrecursionlimit() + 2):
child = Tree(i)
t.add_child(child)
t = child
list(ipreorder(root))
list(ipostorder(root))
list(iupstream(t))
def test_deep_iteration():
root = t = Tree(0)
for i in range(1, sys.getrecursionlimit() + 2):
child = Tree(i)
t.add_child(child)
t = child
list(ipreorder(root))
list(ipostorder(root))
list(iupstream(t))
def _check_trees(trees):
for t in trees:
nt.ok_(len(list(tree.ileaf(t))) == 11)
nt.ok_(len(list(tree.iforking_point(t))) == 10)
nt.ok_(len(list(tree.ipreorder(t))) == 211)
nt.ok_(len(list(tree.ipostorder(t))) == 211)
nt.ok_(len(list(tree.isegment(t))) == 210)
leaves = [l for l in tree.ileaf(t)]
# path length from each leaf to root node.
branch_order = [21, 31, 41, 51, 61, 71, 81, 91, 101, 111, 111]
for i, l in enumerate(leaves):
nt.ok_(len(list(tree.iupstream(l))) == branch_order[i])
def test_upstream_iteration():
nt.ok_(list(val_iter(iupstream(REF_TREE))) == [0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[0]))) == [11, 0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[0].children[0]))) == [111, 11, 0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[0].children[1]))) == [112, 11, 0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[1]))) == [12, 0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[1].children[0]))) == [121, 12, 0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[1].children[1]))) == [122, 12, 0])
def _check_trees(trees):
for t in trees:
nt.ok_(len(list(tree.ileaf(t))) == 11)
nt.ok_(len(list(tree.iforking_point(t))) == 10)
nt.ok_(len(list(tree.ipreorder(t))) == 211)
nt.ok_(len(list(tree.ipostorder(t))) == 211)
nt.ok_(len(list(tree.isegment(t))) == 210)
leaves = [l for l in tree.ileaf(t)]
# path length from each leaf to root node.
branch_order = [21, 31, 41, 51, 61, 71, 81, 91, 101, 111, 111]
for i, l in enumerate(leaves):
nt.ok_(len(list(tree.iupstream(l))) == branch_order[i])
def compare_trees(tree1, tree2):
'''
Comparison between all the nodes and their respective radii between two trees.
Ids are do not have to be identical between the trees, and swapping is allowed
Returns:
False if the trees are not identical. True otherwise.
'''
leaves1 = list(tr.ileaf(tree1))
leaves2 = list(tr.ileaf(tree2))
if len(leaves1) != len(leaves2):
return False
else:
nleaves = len(leaves1)
for leaf1, leaf2 in product(leaves1, leaves2):
is_equal = True
for node1, node2 in izip(tr.val_iter(tr.iupstream(leaf1)),
tr.val_iter(tr.iupstream(leaf2))):
if any(node1[0:5] != node2[0:5]):
is_equal = False
continue
if is_equal:
nleaves -= 1
return nleaves == 0
def test_upstream_iteration():
nt.ok_(list(val_iter(iupstream(REF_TREE))) == [0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[0]))) == [11, 0])
nt.ok_(
list(val_iter(iupstream(REF_TREE.children[0].children[0]))) ==
[111, 11, 0])
nt.ok_(
list(val_iter(iupstream(REF_TREE.children[0].children[1]))) ==
[112, 11, 0])
nt.ok_(list(val_iter(iupstream(REF_TREE.children[1]))) == [12, 0])
nt.ok_(
list(val_iter(iupstream(REF_TREE.children[1].children[0]))) ==
[121, 12, 0])
nt.ok_(
list(val_iter(iupstream(REF_TREE.children[1].children[1]))) ==
[122, 12, 0])