def ssh_box(self):
pyro_layout = QtGui.QHBoxLayout()
user_label = QtGui.QLabel('Remote user:'******'USER'))
self.user_box.setMinimumWidth(100)
port_label = QtGui.QLabel('Local port:')
self.port_box = QtGui.QLineEdit('8801')
self.port_box.setMinimumWidth(100)
self.ssh_start_button = QtGui.QPushButton("Start SSH")
self.ssh_stop_button = QtGui.QPushButton("Stop SSH")
if self.globus.ssh_session is not None:
self.ssh_start_button.setEnabled(False)
self.ssh_stop_button.setEnabled(True)
else:
self.ssh_start_button.setEnabled(True)
self.ssh_stop_button.setEnabled(False)
self.ssh_start_button.clicked.connect(self.ssh_start)
self.ssh_stop_button.clicked.connect(self.ssh_stop)
pyro_layout.addStretch()
pyro_layout.addWidget(user_label)
pyro_layout.addWidget(self.user_box)
pyro_layout.addWidget(port_label)
pyro_layout.addWidget(self.port_box)
pyro_layout.addWidget(self.ssh_start_button)
pyro_layout.addWidget(self.ssh_stop_button)
pyro_layout.addStretch()
return pyro_layout
def add_parameter_rows(self, f):
row = self.parameter_grid.rowCount()
name = self.expanded_name(f.name)
f.rows = []
f.label_box = QtGui.QLabel(name)
self.parameter_grid.addWidget(f.label_box, row, 0)
for p in f.parameters:
p.parameter_index = row
p.parameter_box = QtGui.QLabel(str(p.parameter_index))
p.value_box = QtGui.QLineEdit()
p.value_box.setAlignment(QtCore.Qt.AlignRight)
p.error_box = QtGui.QLabel()
p.min_box = QtGui.QLineEdit('-inf')
p.min_box.setAlignment(QtCore.Qt.AlignRight)
p.max_box = QtGui.QLineEdit('inf')
p.max_box.setAlignment(QtCore.Qt.AlignRight)
p.fixed_box = QtGui.QCheckBox()
# p.bound_box = QtGui.QLineEdit()
self.parameter_grid.addWidget(p.parameter_box,
row,
1,
alignment=QtCore.Qt.AlignHCenter)
self.parameter_grid.addWidget(QtGui.QLabel(p.name), row, 2)
self.parameter_grid.addWidget(p.value_box, row, 3)
self.parameter_grid.addWidget(p.error_box, row, 4)
self.parameter_grid.addWidget(p.min_box, row, 5)
self.parameter_grid.addWidget(p.max_box, row, 6)
self.parameter_grid.addWidget(p.fixed_box,
row,
7,
alignment=QtCore.Qt.AlignHCenter)
# self.parameter_grid.addWidget(p.bound_box, row, 8)
f.rows.append(row)
row += 1
self.parameter_grid.setRowStretch(self.parameter_grid.rowCount(), 10)
def __init__(self, parent=None):
super(ImportDialog, self).__init__(parent)
self.file_type = None
layout = QtGui.QVBoxLayout()
layout.addLayout(self.filebox())
title_layout = QtGui.QHBoxLayout()
title_label = QtGui.QLabel('Title')
self.title_box = QtGui.QLineEdit()
title_layout.addWidget(title_label)
title_layout.addWidget(self.title_box)
layout.addLayout(title_layout)
energy_layout = QtGui.QHBoxLayout()
energy_label = QtGui.QLabel('Incident Energy')
self.energy_box = QtGui.QLineEdit()
self.energy_box.setFixedWidth(150)
energy_layout.addWidget(energy_label)
energy_layout.addWidget(self.energy_box)
energy_layout.addStretch()
layout.addLayout(energy_layout)
step_layout = QtGui.QHBoxLayout()
Q_label = QtGui.QLabel('dQ')
self.Q_box = QtGui.QLineEdit()
self.Q_box.setFixedWidth(75)
E_label = QtGui.QLabel('dE')
self.E_box = QtGui.QLineEdit()
self.E_box.setFixedWidth(75)
self.convert_box = QtGui.QCheckBox('Convert to S(Q,E)')
self.convert_box.setChecked(False)
step_layout.addWidget(self.convert_box)
step_layout.addStretch()
step_layout.addWidget(Q_label)
step_layout.addWidget(self.Q_box)
step_layout.addWidget(E_label)
step_layout.addWidget(self.E_box)
step_layout.addStretch()
layout.addLayout(step_layout)
layout.addWidget(self.close_buttons())
self.setLayout(layout)
self.setWindowTitle("Import " + str(filetype))
def scanbox(self):
'''create widgets for specifying scan range to import'''
scanminlabel = QtGui.QLabel("Min. Scan")
self.scanmin = QtGui.QLineEdit()
self.scanmin.setFixedWidth(100)
self.scanmin.setAlignment(QtCore.Qt.AlignRight)
scanmaxlabel = QtGui.QLabel("Max. Scan")
self.scanmax = QtGui.QLineEdit()
self.scanmax.setFixedWidth(100)
self.scanmax.setAlignment(QtCore.Qt.AlignRight)
scanbox = QtGui.QHBoxLayout()
scanbox.addWidget(scanminlabel)
scanbox.addWidget(self.scanmin)
scanbox.addWidget(scanmaxlabel)
scanbox.addWidget(self.scanmax)
return scanbox
def make_rangebox(self):
rangebox = QtGui.QWidget()
layout = QtGui.QHBoxLayout()
rangeminlabel = QtGui.QLabel("Min. index")
self.rangemin = QtGui.QLineEdit()
self.rangemin.setFixedWidth(150)
self.rangemin.setAlignment(QtCore.Qt.AlignRight)
rangemaxlabel = QtGui.QLabel("Max. index")
self.rangemax = QtGui.QLineEdit()
self.rangemax.setFixedWidth(150)
self.rangemax.setAlignment(QtCore.Qt.AlignRight)
layout.addWidget(rangeminlabel)
layout.addWidget(self.rangemin)
layout.addStretch()
layout.addWidget(rangemaxlabel)
layout.addWidget(self.rangemax)
rangebox.setLayout(layout)
rangebox.setVisible(False)
return rangebox
def make_filterbox(self):
filterbox = QtGui.QWidget()
layout = QtGui.QGridLayout()
layout.setSpacing(10)
prefix_label = QtGui.QLabel('File Prefix')
self.prefix_box = QtGui.QLineEdit()
self.prefix_box.editingFinished.connect(self.set_range)
suffix_label = QtGui.QLabel('File Suffix')
self.suffix_box = QtGui.QLineEdit('')
self.suffix_box.editingFinished.connect(self.get_prefixes)
extension_label = QtGui.QLabel('File Extension')
self.extension_box = QtGui.QLineEdit()
self.extension_box.editingFinished.connect(self.set_extension)
layout.addWidget(prefix_label, 0, 0)
layout.addWidget(self.prefix_box, 0, 1)
layout.addWidget(suffix_label, 0, 2)
layout.addWidget(self.suffix_box, 0, 3)
layout.addWidget(extension_label, 0, 4)
layout.addWidget(self.extension_box, 0, 5)
self.prefix_combo = QtGui.QComboBox()
self.prefix_combo.setSizeAdjustPolicy(QtGui.QComboBox.AdjustToContents)
self.prefix_combo.activated.connect(self.choose_prefix)
self.extension_combo = QtGui.QComboBox()
self.extension_combo.setSizeAdjustPolicy(
QtGui.QComboBox.AdjustToContents)
self.extension_combo.activated.connect(self.choose_extension)
layout.addWidget(self.prefix_combo,
1,
1,
alignment=QtCore.Qt.AlignHCenter)
layout.addWidget(self.extension_combo,
1,
5,
alignment=QtCore.Qt.AlignHCenter)
filterbox.setLayout(layout)
filterbox.setVisible(False)
return filterbox
def __init__(self, parent=None):
super(ImportDialog, self).__init__(parent)
skippedbox = QtGui.QHBoxLayout()
skippedlabel = QtGui.QLabel("No. of skipped rows")
self.skiprows = QtGui.QLineEdit()
self.skiprows.setText('0')
self.skiprows.setFixedWidth(20)
skippedbox.addWidget(skippedlabel)
skippedbox.addWidget(self.skiprows)
layout = QtGui.QVBoxLayout()
layout.addLayout(self.filebox())
layout.addLayout(skippedbox)
layout.addWidget(self.buttonbox())
self.setLayout(layout)
self.setWindowTitle("Import " + str(filetype))
def __init__(self, file_name=None, parent=None):
from nexpy.gui.consoleapp import _mainwindow
self.window = _mainwindow.editors
QtGui.QWidget.__init__(self, parent=self.window.tabs)
self.file_name = file_name
from consoleapp import _nexpy_dir
self.default_directory = os.path.join(_nexpy_dir, 'scripts')
layout = QtGui.QVBoxLayout()
self.text_layout = QtGui.QHBoxLayout()
self.number_box = QtGui.QLabel('1')
self.number_box.setFont(QtGui.QFont('Courier'))
self.number_box.setAlignment(QtCore.Qt.AlignTop | QtCore.Qt.AlignRight)
self.number_box.setStyleSheet("QLabel {padding: 1px 0}")
self.text_box = NXPlainTextEdit(self)
self.text_layout.addWidget(self.number_box)
self.text_layout.addWidget(self.text_box)
layout.addLayout(self.text_layout)
run_button = QtGui.QPushButton('Run Script')
run_button.clicked.connect(self.run_script)
run_button.setAutoDefault(False)
self.argument_box = QtGui.QLineEdit()
self.argument_box.setMinimumWidth(200)
save_button = QtGui.QPushButton('Save')
save_button.clicked.connect(self.save_script)
save_as_button = QtGui.QPushButton('Save as...')
save_as_button.clicked.connect(self.save_script_as)
self.delete_button = QtGui.QPushButton('Delete')
self.delete_button.clicked.connect(self.delete_script)
close_button = QtGui.QPushButton('Close Tab')
close_button.clicked.connect(self.close)
button_layout = QtGui.QHBoxLayout()
button_layout.addWidget(run_button)
button_layout.addWidget(self.argument_box)
button_layout.addStretch()
button_layout.addWidget(save_button)
button_layout.addWidget(save_as_button)
button_layout.addWidget(self.delete_button)
button_layout.addWidget(close_button)
layout.addLayout(button_layout)
self.setLayout(layout)
if self.file_name:
with open(self.file_name, 'r') as f:
text = f.read()
self.text_box.setPlainText(text)
self.window.tabs.addTab(self, os.path.basename(self.file_name))
self.update_line_numbers(self.text_box.count)
else:
self.delete_button.setVisible(False)
self.window.tabs.addTab(self,
'Untitled %s' % (self.window.tabs.count()+1))
self.index = self.window.tabs.indexOf(self)
self.window.tabs.adjustSize()
self.window.tabs.setCurrentWidget(self)
self.hl = Highlighter(self.text_box.document())
def __init__(self, entry, parent=None):
super(FitDialog, self).__init__(parent)
self.setMinimumWidth(850)
self.data = self.initialize_data(entry.data)
from nexpy.gui.consoleapp import _tree
self.tree = _tree
from nexpy.gui.plotview import plotview
self.plotview = plotview
self.functions = []
self.parameters = []
self.first_time = True
self.fitted = False
self.fit = None
self.initialize_functions()
function_layout = QtGui.QHBoxLayout()
self.functioncombo = QtGui.QComboBox()
for name in sorted(self.function_module.keys()):
self.functioncombo.addItem(name)
self.functioncombo.setSizeAdjustPolicy(
QtGui.QComboBox.AdjustToContents)
self.functioncombo.setMinimumWidth(100)
add_button = QtGui.QPushButton("Add Function")
add_button.clicked.connect(self.add_function)
function_layout.addWidget(self.functioncombo)
function_layout.addWidget(add_button)
function_layout.addStretch()
self.header_font = QtGui.QFont()
self.header_font.setBold(True)
self.parameter_layout = self.initialize_parameter_grid()
self.remove_layout = QtGui.QHBoxLayout()
remove_button = QtGui.QPushButton("Remove Function")
remove_button.clicked.connect(self.remove_function)
self.removecombo = QtGui.QComboBox()
self.removecombo.setSizeAdjustPolicy(QtGui.QComboBox.AdjustToContents)
self.removecombo.setMinimumWidth(100)
self.remove_layout.addWidget(remove_button)
self.remove_layout.addWidget(self.removecombo)
self.remove_layout.addStretch()
self.plot_layout = QtGui.QHBoxLayout()
plot_data_button = QtGui.QPushButton('Plot Data')
plot_data_button.clicked.connect(self.plot_data)
plot_function_button = QtGui.QPushButton('Plot Function')
plot_function_button.clicked.connect(self.plot_model)
self.plotcombo = QtGui.QComboBox()
self.plotcombo.setSizeAdjustPolicy(QtGui.QComboBox.AdjustToContents)
self.plotcombo.setMinimumWidth(100)
plot_label = QtGui.QLabel('X-axis:')
self.plot_minbox = QtGui.QLineEdit(str(self.plotview.xtab.axis.min))
self.plot_minbox.setAlignment(QtCore.Qt.AlignRight)
plot_tolabel = QtGui.QLabel(' to ')
self.plot_maxbox = QtGui.QLineEdit(str(self.plotview.xtab.axis.max))
self.plot_maxbox.setAlignment(QtCore.Qt.AlignRight)
self.plot_checkbox = QtGui.QCheckBox('Use Data Points')
self.plot_layout.addWidget(plot_data_button)
self.plot_layout.addWidget(plot_function_button)
self.plot_layout.addWidget(self.plotcombo)
self.plot_layout.addWidget(plot_label)
self.plot_layout.addWidget(self.plot_minbox)
self.plot_layout.addWidget(plot_tolabel)
self.plot_layout.addWidget(self.plot_maxbox)
self.plot_layout.addWidget(self.plot_checkbox)
self.plot_layout.addStretch()
self.action_layout = QtGui.QHBoxLayout()
fit_button = QtGui.QPushButton("Fit")
fit_button.clicked.connect(self.fit_data)
self.fit_label = QtGui.QLabel()
if self.data.nxerrors:
self.fit_checkbox = QtGui.QCheckBox('Use Errors')
self.fit_checkbox.setCheckState(QtCore.Qt.Checked)
else:
self.fit_checkbox = QtGui.QCheckBox('Use Poisson Errors')
self.fit_checkbox.setCheckState(QtCore.Qt.Unchecked)
self.fit_checkbox.stateChanged.connect(self.define_errors)
self.report_button = QtGui.QPushButton("Show Fit Report")
self.report_button.clicked.connect(self.report_fit)
self.save_button = QtGui.QPushButton("Save Parameters")
self.save_button.clicked.connect(self.save_fit)
self.restore_button = QtGui.QPushButton("Restore Parameters")
self.restore_button.clicked.connect(self.restore_parameters)
self.action_layout.addWidget(fit_button)
self.action_layout.addWidget(self.fit_label)
self.action_layout.addStretch()
self.action_layout.addWidget(self.fit_checkbox)
self.action_layout.addWidget(self.save_button)
self.layout = QtGui.QVBoxLayout()
self.layout.addLayout(function_layout)
self.layout.addWidget(self.close_buttons())
self.setLayout(self.layout)
self.setWindowTitle("Fit NeXus Data")
self.load_entry(entry)
def __init__(self, parent=None):
super(MapDialog, self).__init__(parent)
self.select_entry()
dets_list = {}
self.dets = self.entry['instrument/fluorescence']
self.signal_combo = self.select_box(self.dets, default='sdd3')
self.axes = self.entry['sample/positioner']
self.axis1_combo = self.select_box(self.axes, default='hex_xp')
self.axis2_combo = self.select_box(self.axes, default='hex_yp')
roi_peak_layout = QtGui.QHBoxLayout()
roi_peak_layout.addWidget(QtGui.QLabel('ROI Peak'))
self.roi_peak = QtGui.QSlider(Qt.Horizontal)
self.pLabel = QtGui.QLineEdit()
self.pLabel.setText('800')
self.pLabel.setSizePolicy(QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Minimum))
self.pLabel.setAlignment(Qt.AlignRight)
self.roi_peak.setMinimum(0)
self.roi_peak.setMaximum(256)
self.roi_peak.setValue(80)
self.roi_peak.setTickPosition(QtGui.QSlider.TicksBelow)
self.roi_peak.setTickInterval(1)
roi_peak_layout.addWidget(self.roi_peak)
self.roi_peak.valueChanged.connect(self.setRoi)
self.pLabel.returnPressed.connect(self.setRoi2)
self.pUnits = QtGui.QLabel('eV')
roi_peak_layout.addWidget(self.pLabel)
roi_peak_layout.addWidget(self.pUnits)
roi_width_layout = QtGui.QHBoxLayout()
roi_width_layout.addWidget(QtGui.QLabel('ROI Width'))
self.roi_width = QtGui.QSlider(Qt.Horizontal)
self.wLabel = QtGui.QLineEdit()
self.wLabel.setText('200')
self.wLabel.setSizePolicy(QtGui.QSizePolicy(QtGui.QSizePolicy.Minimum, QtGui.QSizePolicy.Minimum))
self.wLabel.setAlignment(Qt.AlignRight)
self.roi_width.setMinimum(2)
self.roi_width.setMaximum(100)
self.roi_width.setValue(20)
self.roi_width.setTickPosition(QtGui.QSlider.TicksBelow)
self.roi_peak.setTickInterval(1)
roi_width_layout.addWidget(self.roi_width)
self.roi_width.valueChanged.connect(self.setRoi)
self.wLabel.returnPressed.connect(self.setRoi2)
self.signal_combo.activated.connect(self.setRoi)
self.axis1_combo.activated.connect(self.setRoi)
self.axis2_combo.activated.connect(self.setRoi)
self.entry_box.activated.connect(self.setRoi)
self.wUnits = QtGui.QLabel('eV')
roi_width_layout.addWidget(self.wLabel)
roi_width_layout.addWidget(self.wUnits)
lab_sig_layout = QtGui.QHBoxLayout()
self.lab_sig = self.labels('Detector :', align='left')
lab_sig_layout.addLayout(self.lab_sig)
lab_sig_layout.addWidget(self.signal_combo)
lab_sig_layout.addStretch()
lab_axis1_layout = QtGui.QHBoxLayout()
self.lab_axis1 = self.labels('X-Axis :', align='left')
lab_axis1_layout.addLayout(self.lab_axis1)
lab_axis1_layout.addWidget(self.axis1_combo)
lab_axis1_layout.addStretch()
lab_axis2_layout = QtGui.QHBoxLayout()
self.lab_axis2 = self.labels('Y-Axis :', align='left')
lab_axis2_layout.addLayout(self.lab_axis2)
lab_axis2_layout.addWidget(self.axis2_combo)
lab_axis2_layout.addStretch()
self.set_layout(self.entry_layout, lab_sig_layout, lab_axis1_layout,
lab_axis2_layout, roi_peak_layout, roi_width_layout, self.close_buttons())
self.set_title('Convert to 2D map')
def __init__(self, parent=None):
super(MultiXasDialog, self).__init__(parent)
layout = QtGui.QVBoxLayout()
self.h_line = QHLine()
self.h_line2 = QHLine()
self.h_line3 = QHLine()
self.select_root(text='Select File :')
self.select_entry_num(text='First Entry :')
self.select_entry_num(text='Last Entry :', other='True')
self.select_abs()
self.select_sdd()
self.roi_peak_slider()
self.roi_width_slider()
self.pb_ploteems = QtGui.QPushButton()
self.pb_ploteems.setObjectName("plot eems")
self.pb_ploteems.setText("Plot EEMS")
self.pb_getsumplot = QtGui.QPushButton()
self.pb_getsumplot.setObjectName("summary plot")
self.pb_getsumplot.setText("Summary Plot")
self.pb_get_averaged = QtGui.QPushButton()
self.pb_get_averaged.setObjectName("interpolated plots")
self.pb_get_averaged.setText("Interpolated Plots")
self.pb_get_single_averaged = QtGui.QPushButton()
self.pb_get_single_averaged.setObjectName("single interpolated plot")
self.pb_get_single_averaged.setText("Single Interpolated Plot")
self.pb_get_normalized = QtGui.QPushButton()
self.pb_get_normalized.setObjectName("normalized data")
self.pb_get_normalized.setText("Normalized Data")
self.bin_interval = QtGui.QLineEdit("0.1")
self.bin_interval.setObjectName("Bin Interval")
self.bad_scans = QtGui.QLineEdit()
self.bad_scans.setObjectName("Bad Scans")
layout.addLayout(self.root_layout)
layout.addLayout(self.select_sdd())
layout.addLayout(self.select_eem_entry())
layout.addWidget(self.pb_ploteems)
layout.addWidget(self.h_line)
layout.addLayout(self.entry_num_layout)
layout.addLayout(self.other_entry_num_layout)
layout.addLayout(self.roi_peak_slider())
layout.addLayout(self.roi_width_slider())
layout.addLayout(self.select_abs())
layout.addWidget(self.pb_getsumplot)
layout.addWidget(self.h_line2)
bin_interval_layout = QtGui.QHBoxLayout()
bin_interval_layout.addWidget(QtGui.QLabel('Bin Interval (eV) : '))
bin_interval_layout.addWidget(self.bin_interval)
layout.addLayout(bin_interval_layout)
bad_scan_layout = QtGui.QHBoxLayout()
bad_scan_layout.addWidget(QtGui.QLabel('Bad Scans : '))
bad_scan_layout.addWidget(self.bad_scans)
layout.addLayout(bad_scan_layout)
layout.addWidget(self.pb_get_averaged)
layout.addWidget(self.h_line3)
layout.addLayout(self.select_normalization())
layout.addWidget(self.pb_get_normalized)
# layout.addWidget(self.close_buttons())
self.setLayout(layout)
self.pb_ploteems.clicked.connect(self.plot_eems)
self.pb_getsumplot.clicked.connect(self.plot_sum)
self.pb_get_averaged.clicked.connect(self.plot_averaged_data)
self.pb_get_normalized.clicked.connect(self.plot_normalized_data)
self.root_box.currentIndexChanged.connect(self.refresh_entry)
self.set_title('Multi XAS')