def fit(self, subjects_dir, target=None):
study_dir = os.path.split(subjects_dir[0])[0]
self.study_id_ = os.path.split(study_dir)[1]
self.run_key_ = check_run_key(study_dir)
self.task_contrasts_ = check_task_contrasts(study_dir, self.model_id,
self.run_key_)
self.condition_key_ = check_condition_key(study_dir, self.model_id)
self.scan_key_ = check_scan_key(study_dir)
self.task_key_ = get_table(os.path.join(study_dir, 'task_key.txt'))
self.model_key_ = get_table(os.path.join(study_dir, 'model_key.txt'))
self.orthogonalize_ = check_orthogonalize(study_dir, self.run_key_)
return self
def fit(self, subjects_dir, target=None):
study_dir = os.path.split(subjects_dir[0])[0]
self.study_id_ = os.path.split(study_dir)[1]
self.run_key_ = check_run_key(study_dir)
self.task_contrasts_ = check_task_contrasts(
study_dir, self.model_id, self.run_key_)
self.condition_key_ = check_condition_key(study_dir, self.model_id)
self.scan_key_ = check_scan_key(study_dir)
self.task_key_ = get_table(os.path.join(study_dir, 'task_key.txt'))
self.model_key_ = get_table(os.path.join(study_dir, 'model_key.txt'))
self.orthogonalize_ = check_orthogonalize(study_dir, self.run_key_)
return self
def check_scan_key(study_dir):
"""Parse scan_key file to get scanning information (currently only TR).
"""
if not os.path.exists(os.path.join(study_dir, 'scan_key.txt')):
warnings.warn('Scan key does not exist')
return {}
scan_key = get_table(os.path.join(study_dir, 'scan_key.txt'))
scan_key['TR'] = float(scan_key['TR'])
return scan_key
def check_scan_key(study_dir):
"""Parse scan_key file to get scanning information (currently only TR).
"""
if not os.path.exists(os.path.join(study_dir, 'scan_key.txt')):
warnings.warn('Scan key does not exist')
return {}
scan_key = get_table(os.path.join(study_dir, 'scan_key.txt'))
scan_key['TR'] = float(scan_key['TR'])
return scan_key
def check_scan_key(study_dir):
"""Parse scan_key file to get scanning information (currently only TR).
"""
scan_key = get_table(os.path.join(study_dir, 'scan_key.txt'))
scan_key['TR'] = float(scan_key['TR'])
return scan_key