def test_flm_reporting(use_method):
with InTemporaryDirectory():
shapes, rk = ((7, 8, 7, 15), (7, 8, 7, 16)), 3
mask, fmri_data, design_matrices = write_fake_fmri_data_and_design(shapes, rk)
flm = FirstLevelModel(mask_img=mask).fit(
fmri_data, design_matrices=design_matrices)
contrast = np.eye(3)[1]
if use_method:
report_flm = flm.generate_report(
contrast, plot_type='glass', height_control=None,
min_distance=15, alpha=0.001, threshold=2.78)
else:
report_flm = glmr.make_glm_report(flm, contrast, plot_type='glass',
height_control=None,
min_distance=15,
alpha=0.001, threshold=2.78,
)
'''
catches & raises UnicodeEncodeError in HTMLDocument.get_iframe()
Python2's limited unicode support causes HTMLDocument.get_iframe() to
mishandle certain unicode characters, like the greek alpha symbol
and raises this error.
Calling HTMLDocument.get_iframe() here causes the tests
to fail on Python2, alerting us if such a situation arises
due to future modifications.
'''
report_iframe = report_flm.get_iframe()
# So flake8 doesn't complain about not using variable (F841)
report_iframe
del mask, flm, fmri_data
def test_masking_first_level_model():
"""
Checks that using NiftiMasker when instantiating
FirstLevelModel doesn't raise Error when calling
generate_report().
"""
with InTemporaryDirectory():
shapes, rk = ((7, 8, 7, 15), (7, 8, 7, 16)), 3
mask, fmri_data, design_matrices =\
write_fake_fmri_data_and_design(shapes, rk)
masker = NiftiMasker(mask_img=mask)
masker.fit(fmri_data)
flm = FirstLevelModel(mask_img=masker).fit(
fmri_data, design_matrices=design_matrices
)
contrast = np.eye(3)[1]
report_flm = flm.generate_report(
contrast, plot_type='glass', height_control=None,
min_distance=15, alpha=0.001, threshold=2.78
)
report_iframe = report_flm.get_iframe()
# So flake8 doesn't complain about not using variable (F841)
report_iframe
del mask, flm, fmri_data, masker
