class _TSV2JSONOutputSpec(TraitedSpec):
output = traits.Either(
traits.Dict,
File(exists=True),
traits.Instance(OrderedDict),
desc="Output dictionary or JSON file",
)
class _TSV2JSONInputSpec(BaseInterfaceInputSpec):
in_file = File(exists=True, mandatory=True, desc='Input TSV file')
index_column = traits.Str(mandatory=True,
desc='Name of the column in the TSV to be used '
'as the top-level key in the JSON. All '
'remaining columns will be assigned as '
'nested keys.')
output = traits.Either(None,
File,
desc='Path where the output file is to be saved. '
'If this is `None`, then a JSON-compatible '
'dictionary is returned instead.')
additional_metadata = traits.Either(None,
traits.Dict,
traits.Instance(OrderedDict),
usedefault=True,
desc='Any additional metadata that '
'should be applied to all '
'entries in the JSON.')
drop_columns = traits.Either(None,
traits.List(),
usedefault=True,
desc='List of columns in the TSV to be '
'dropped from the JSON.')
enforce_case = traits.Bool(True,
usedefault=True,
desc='Enforce snake case for top-level keys '
'and camel case for nested keys')
class _TSV2JSONInputSpec(BaseInterfaceInputSpec):
in_file = File(exists=True, mandatory=True, desc="Input TSV file")
index_column = traits.Str(
mandatory=True,
desc="Name of the column in the TSV to be used "
"as the top-level key in the JSON. All "
"remaining columns will be assigned as "
"nested keys.",
)
output = traits.Either(
None,
File,
desc="Path where the output file is to be saved. "
"If this is `None`, then a JSON-compatible "
"dictionary is returned instead.",
)
additional_metadata = traits.Either(
None,
traits.Dict,
traits.Instance(OrderedDict),
usedefault=True,
desc="Any additional metadata that "
"should be applied to all "
"entries in the JSON.",
)
drop_columns = traits.Either(
None,
traits.List(),
usedefault=True,
desc="List of columns in the TSV to be "
"dropped from the JSON.",
)
enforce_case = traits.Bool(
True,
usedefault=True,
desc="Enforce snake case for top-level keys "
"and camel case for nested keys",
)
class _DictMergeInputSpec(BaseInterfaceInputSpec):
in_dicts = traits.List(
traits.Either(traits.Dict, traits.Instance(OrderedDict)),
desc="Dictionaries to be merged. In the event of a collision, values "
"from dictionaries later in the list receive precedence.",
)
