def test_BRAINSABC_outputs():
output_map = dict(atlasToSubjectInitialTransform=dict(),
atlasToSubjectTransform=dict(),
implicitOutputs=dict(),
outputDir=dict(),
outputDirtyLabels=dict(),
outputLabels=dict(),
outputVolumes=dict(),
saveState=dict(),
)
outputs = BRAINSABC.output_spec()
for key, metadata in output_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(outputs.traits()[key], metakey), value
def test_BRAINSABC_inputs():
input_map = dict(args=dict(argstr='%s',
),
atlasDefinition=dict(argstr='--atlasDefinition %s',
),
atlasToSubjectInitialTransform=dict(argstr='--atlasToSubjectInitialTransform %s',
hash_files=False,
),
atlasToSubjectTransform=dict(argstr='--atlasToSubjectTransform %s',
hash_files=False,
),
atlasToSubjectTransformType=dict(argstr='--atlasToSubjectTransformType %s',
),
atlasWarpingOff=dict(argstr='--atlasWarpingOff ',
),
debuglevel=dict(argstr='--debuglevel %d',
),
defaultSuffix=dict(argstr='--defaultSuffix %s',
),
environ=dict(nohash=True,
usedefault=True,
),
filterIteration=dict(argstr='--filterIteration %d',
),
filterMethod=dict(argstr='--filterMethod %s',
),
filterTimeStep=dict(argstr='--filterTimeStep %f',
),
gridSize=dict(argstr='--gridSize %s',
sep=',',
),
ignore_exception=dict(nohash=True,
usedefault=True,
),
implicitOutputs=dict(argstr='--implicitOutputs %s...',
hash_files=False,
),
inputVolumeTypes=dict(argstr='--inputVolumeTypes %s',
sep=',',
),
inputVolumes=dict(argstr='--inputVolumes %s...',
),
interpolationMode=dict(argstr='--interpolationMode %s',
),
maxBiasDegree=dict(argstr='--maxBiasDegree %d',
),
maxIterations=dict(argstr='--maxIterations %d',
),
medianFilterSize=dict(argstr='--medianFilterSize %s',
sep=',',
),
numberOfThreads=dict(argstr='--numberOfThreads %d',
),
outputDir=dict(argstr='--outputDir %s',
hash_files=False,
),
outputDirtyLabels=dict(argstr='--outputDirtyLabels %s',
hash_files=False,
),
outputFormat=dict(argstr='--outputFormat %s',
),
outputLabels=dict(argstr='--outputLabels %s',
hash_files=False,
),
outputVolumes=dict(argstr='--outputVolumes %s...',
hash_files=False,
),
posteriorTemplate=dict(argstr='--posteriorTemplate %s',
),
restoreState=dict(argstr='--restoreState %s',
),
saveState=dict(argstr='--saveState %s',
hash_files=False,
),
subjectIntermodeTransformType=dict(argstr='--subjectIntermodeTransformType %s',
),
terminal_output=dict(nohash=True,
),
useKNN=dict(argstr='--useKNN ',
),
writeLess=dict(argstr='--writeLess ',
),
)
inputs = BRAINSABC.input_spec()
for key, metadata in input_map.items():
for metakey, value in metadata.items():
yield assert_equal, getattr(inputs.traits()[key], metakey), value
