Пример #1
0
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import numpy as np  # pylint: disable=unused-import
import typing  # pylint: disable=unused-import
from nomad.metainfo import (  # pylint: disable=unused-import
    MSection, MCategory, Category, Package, Quantity, Section, SubSection,
    SectionProxy, Reference)
from nomad.metainfo.legacy import LegacyDefinition

from nomad.datamodel.metainfo import common
from nomad.datamodel.metainfo import public

m_package = Package(
    name='dftbplus_nomadmetainfo_json',
    description='None',
    a_legacy=LegacyDefinition(name='dftbplus.nomadmetainfo.json'))


class section_molecule_type(common.section_molecule_type):

    m_def = Section(validate=False,
                    extends_base_section=True,
                    a_legacy=LegacyDefinition(name='section_molecule_type'))

    atom = Quantity(type=np.dtype(np.int32),
                    shape=[],
                    description='''
        -
        ''',
                    categories=[common.settings_atom_in_molecule],
Пример #2
0
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#

from nomad.metainfo import Section, Quantity, Package

from nomad.datamodel.metainfo.public import section_single_configuration_calculation as SCC

m_package = Package(name='openmx_nomadmetainfo_json', description='None')


# We extend the existing common definition of a section "single configuration calculation"
class OpenmxSCC(SCC):
    # We alter the default base class behavior to add all definitions to the existing
    # base class instead of inheriting from the base class
    m_def = Section(extends_base_section=True)

    # We define an additional example quantity. Use the prefix x_<parsername>_ to denote
    # non common quantities.
    x_example_magic_value = Quantity(
        type=int, description='The magic value from a magic source.')


m_package.__init_metainfo__()
Пример #3
0
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import numpy as np  # pylint: disable=unused-import
import typing  # pylint: disable=unused-import
from nomad.metainfo import (  # pylint: disable=unused-import
    MSection, MCategory, Category, Package, Quantity, Section, SubSection,
    SectionProxy, Reference)
from nomad.metainfo.legacy import LegacyDefinition

from nomad.datamodel.metainfo import public

m_package = Package(
    name='fplo_temporaries_nomadmetainfo_json',
    description='None',
    a_legacy=LegacyDefinition(name='fplo.temporaries.nomadmetainfo.json'))


class section_run(public.section_run):

    m_def = Section(validate=False,
                    extends_base_section=True,
                    a_legacy=LegacyDefinition(name='section_run'))

    x_fplo_t_program_version_main = Quantity(
        type=str,
        shape=[],
        description='''
        temporary: FPLO main version
        ''',
Пример #4
0
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import numpy as np

from nomad.metainfo import Package, Quantity, Section
from nomad.datamodel.metainfo import common_experimental

m_package = Package(name='mpes')


class Method(common_experimental.Method):

    m_def = Section(validate=False, extends_base_section=True)

    general_beamline = Quantity(type=str,
                                description='''
        Name of the beamline the experiment took place.
        ''')

    general_source_pump = Quantity(type=str,
                                   description='''
        Name or model of the pump light source.
        ''')
Пример #5
0
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
#     http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
from nomad.metainfo import Package, Quantity, Section
from nomad.datamodel.metainfo import common_experimental

m_package = Package(name='aptfim')


class Method(common_experimental.Method):

    m_def = Section(validate=False, extends_base_section=True)

    experiment_operation_method = Quantity(
        type=str,
        description='Operation mode of the instrument (APT, FIM or combination)'
    )

    experiment_imaging_method = Quantity(
        type=str,
        description=
        'Pulsing method to enforce a controlled ion evaporation sequence')
Пример #6
0
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import numpy as np  # pylint: disable=unused-import
import typing  # pylint: disable=unused-import
from nomad.metainfo import (  # pylint: disable=unused-import
    MSection, MCategory, Category, Package, Quantity, Section, SubSection,
    SectionProxy, Reference)
from nomad.metainfo.legacy import LegacyDefinition

from nomad.datamodel.metainfo import public

m_package = Package(
    name='turbomole_nomadmetainfo_json',
    description='None',
    a_legacy=LegacyDefinition(name='turbomole.nomadmetainfo.json'))


class x_turbomole_section_eigenvalues_GW(MSection):
    '''
    section for the eigenvalues of a GW calculation (at present only pertubative G0W0)
    '''

    m_def = Section(
        validate=False,
        a_legacy=LegacyDefinition(name='x_turbomole_section_eigenvalues_GW'))

    x_turbomole_eigenvalue_correlation_perturbativeGW = Quantity(
        type=np.dtype(np.float64),
        shape=[],
Пример #7
0
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
#
import numpy as np            # pylint: disable=unused-import
import typing                 # pylint: disable=unused-import
from nomad.metainfo import (  # pylint: disable=unused-import
    MSection, MCategory, Category, Package, Quantity, Section, SubSection, SectionProxy,
    Reference
)
from nomad.metainfo.legacy import LegacyDefinition

from nomad.datamodel.metainfo import public

m_package = Package(
    name='cpmd_general_nomadmetainfo_json',
    description='None',
    a_legacy=LegacyDefinition(name='cpmd.general.nomadmetainfo.json'))


class x_cpmd_section_start_information(MSection):
    '''
    Contains information about the starting conditions for this run
    '''

    m_def = Section(validate=False, a_legacy=LegacyDefinition(name='x_cpmd_section_start_information'))

    x_cpmd_start_datetime = Quantity(
        type=str,
        shape=[],
        description='''
        CPMD run start time and date
# See the License for the specific language governing permissions and
# limitations under the License.
#
import numpy as np  # pylint: disable=unused-import
import typing  # pylint: disable=unused-import
from nomad.metainfo import (  # pylint: disable=unused-import
    MSection, MCategory, Category, Package, Quantity, Section, SubSection,
    SectionProxy, Reference)
from nomad.metainfo.legacy import LegacyDefinition

from vaspparser.metainfo import vasp_incars
from nomad.datamodel.metainfo import public
from vaspparser.metainfo import vasp_incarsOut

m_package = Package(
    name='vasp_incarsUnknown_nomadmetainfo_json',
    description='None',
    a_legacy=LegacyDefinition(name='vasp.incarsUnknown.nomadmetainfo.json'))


class x_vasp_incarUnknown_param(MCategory):
    '''
    Unknown incar parameters.  By 'unknown' we refer to incar parameters in the OLD
    (predated Sept.2019) 'vasp.nomadmetainfo.json' that are **not** listed in the current
    (Oct.2019) VaspWiki
    '''

    m_def = Category(a_legacy=LegacyDefinition(
        name='x_vasp_incarUnknown_param'))


class section_method(public.section_method):