def testArgumentOrder(self):
self.getFileNames()
with nostderrout():
statuslyx, msglyx = tablefill(template = self.lyxtemplate,
input = self.input_appendix,
output = self.lyxoutput)
statustex, msgtex = tablefill(template = self.textemplate,
input = self.input_appendix,
output = self.texoutput)
self.assertEqual('SUCCESS', statustex)
self.assertEqual('SUCCESS', statuslyx)
texfilled_data_args1 = open(self.texoutput, 'rU').readlines()
lyxfilled_data_args1 = open(self.lyxoutput, 'rU').readlines()
with nostderrout():
statuslyx, msglyx = tablefill(output = self.lyxoutput,
template = self.lyxtemplate,
input = self.input_appendix)
statustex, msgtex = tablefill(output = self.lyxoutput,
template = self.lyxtemplate,
input = self.input_appendix)
self.assertEqual('SUCCESS', statustex)
self.assertEqual('SUCCESS', statuslyx)
texfilled_data_args2 = open(self.texoutput, 'rU').readlines()
lyxfilled_data_args2 = open(self.lyxoutput, 'rU').readlines()
self.assertEqual(texfilled_data_args1, texfilled_data_args2)
self.assertEqual(lyxfilled_data_args1, lyxfilled_data_args2)
def testIllegalSyntax(self):
self.getFileNames()
# missing arguments
with nostderrout():
errorlyx, msglyx = tablefill(input = self.input_appendix,
template = self.lyxtemplate)
errortex, msgtex = tablefill(input = self.input_appendix,
template = self.textemplate)
self.assertEqual('ERROR', errortex)
self.assertEqual('ERROR', errorlyx)
self.assertIn('KeyError', msgtex)
self.assertIn('KeyError', msglyx)
# Must be strings
with nostderrout():
errorlyx, msglyx = tablefill(input = [self.input_appendix],
template = self.lyxtemplate,
output = self.lyxoutput)
errortex, msgtex = tablefill(input = [self.input_appendix],
template = self.textemplate,
output = self.texoutput)
self.assertEqual('ERROR', errortex)
self.assertEqual('ERROR', errorlyx)
self.assertIn('TypeError', msgtex)
self.assertIn('TypeError', msglyx)
with nostderrout():
errorlyx, msglyx = tablefill(input = self.input_appendix,
template = self.lyxtemplate,
output = 10)
errortex, msgtex = tablefill(input = self.input_appendix,
template = self.textemplate,
output = 10)
self.assertEqual('ERROR', errortex)
self.assertEqual('ERROR', errorlyx)
self.assertIn('TypeError', msgtex)
self.assertIn('TypeError', msglyx)
# unexpected arguments are ignored
with nostderrout():
statuslyx, msglyx = tablefill(input = self.input_appendix,
template = self.lyxtemplate,
waffle = "My Waffles are Best!",
output = self.lyxoutput)
statustex, msgtex = tablefill(input = self.input_appendix,
template = self.textemplate,
waffle = "My Waffles are Best!",
output = self.texoutput)
self.assertEqual('SUCCESS', statustex)
self.assertEqual('SUCCESS', statuslyx)
def test_default_log(self):
with nostderrout():
run_perl(program='./input/perl_test_script.pl')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Test script completed', logfile_data)
self.assertIn('Time : ', logfile_data)
self.assertTrue(os.path.isfile('output.txt'))
def test_executable(self):
with nostderrout():
run_rbatch(program='./input/R_test_script.R',
executable='R CMD BATCH')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Test script complete', logfile_data)
self.assertTrue(os.path.isfile('output.txt'))
def test_change_dir(self):
with nostderrout():
run_rbatch(program='./input/R_test_script.R', changedir=True)
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Test script complete', logfile_data)
self.assertIn('> proc.time()', logfile_data)
self.assertTrue(os.path.isfile('./input/output.txt'))
def test_default_log(self):
with nostderrout():
run_lyx(program='./input/lyx_test_file.lyx')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('LaTeX', logfile_data)
self.assertIn('Time : ', logfile_data)
self.assertTrue(os.path.isfile('../output/lyx_test_file.pdf'))
def test_legal_input(self):
default_makelog_file = os.path.join(self.output_dir, 'make.log')
default_links_dir = '../external_links/'
self.assertFalse(os.path.isdir(default_links_dir))
links = './input/links_legal.txt'
with nostderrout():
make_links(links, quiet=True)
self.assertTrue(os.path.isdir(default_links_dir))
links_data = open(links, 'r').readlines()
comments_ct = self.find_comment_lines(links_data)
wildcard_lines_ct = len([l for l in links_data if '*' in l])
wildcard_files_ct = len(
[f for f in os.listdir('./input/') if f.endswith('_script.m')])
number_of_links = len(links_data) - comments_ct - wildcard_lines_ct + \
wildcard_files_ct
success_count = self.get_string_count(default_makelog_file,
'Symlink successfully created.')
self.assertTrue(success_count == number_of_links)
prefix_files_ct = len([
f for f in os.listdir('../external_links/')
if f.startswith('input_')
])
self.assertEqual(prefix_files_ct, wildcard_files_ct)
f = open('../external_links/ext.txt', 'r')
self.assertTrue(f.readline().startswith('11 22'))
f.close()
logfile_data = open(default_makelog_file, 'r').read()
self.assertNotIn('Error', logfile_data)
def test_bad_executable(self):
with nostderrout():
run_rinstall(
package='./input/rinstall_test_package/Ecdat_0.1-6.1.tar.gz',
executable='nonexistent_R_executable')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('executed with errors', logfile_data)
def test_nofile(self):
self.assertFalse(os.path.isfile('../output/add1.txt'))
with nostderrout():
add_log('../output/add1.txt', makelog='../output/make.log')
logfile_data = open('../output/make.log', 'r').read()
message = messages.note_nofile % '../output/add1.txt'
self.assertIn(message, logfile_data)
def setUp(self):
makelog_file = '../output/make.log'
output_dir = '../output/'
with nostderrout():
clear_output_dirs(output_dir, '')
start_make_logging(makelog_file)
run_stata(program='./input/stata_test_script.do')
def test_no_manifest_file(self):
manifest_file = '../output/data_file_manifest.log'
os.remove(manifest_file)
with nostderrout():
check_manifest(manifest_file, '../output/')
logfile_data = open('../output/make.log', 'r').readlines()
self.assertIn('CritError:', logfile_data[-1])
def test_wildcards(self):
file_list = glob.glob(os.path.join(self.private, '*'))
self.assertTrue(len(file_list) >= 8)
with nostderrout():
delete_files('./input/externals_delete_files/private/*')
file_list = glob.glob(os.path.join(self.private, '*'))
self.assertEqual(len(file_list), 0)
def test_standard(self):
self.assertTrue(os.path.exists('./externals/'))
file_list = os.listdir('./externals/')
self.assertTrue(len(file_list) > 0)
with nostderrout():
remove_dir('./externals/')
self.assertFalse(os.path.exists('./externals/'))
def test_executable(self):
with nostderrout():
run_matlab(program='./input/matlab_test_script.m',
executable='matlab')
self.assert_proper_output('../output/make.log')
self.assertTrue(os.path.isfile('../output/matlab_test.mat'))
self.assertTrue(os.path.isfile('../output/matlab_test.eps'))
def test_executable(self):
with nostderrout():
run_rinstall(
package='./input/rinstall_test_package/Ecdat_0.1-6.1.tar.gz',
executable='R CMD INSTALL')
self.assertTrue(
self.last_line_equals('../output/make.log', '* DONE (Ecdat)\n'))
def test_option(self):
with nostderrout():
run_mathematica(program='./input/mathematica_test_script.m',
option='-initfile ' +
'./input/mathematica_init_script.m')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('mathematica test ended', logfile_data)
def test_options(self):
with nostderrout():
run_python(program='./input/python_test_script.py', option='-h')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn(
'Options and arguments ' +
'(and corresponding environment variables):', logfile_data)
def test_change_dir(self):
with nostderrout():
run_mathematica(program='./input/mathematica_test_script.m',
changedir=True)
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('mathematica test ended', logfile_data)
self.assertTrue(os.path.isfile('./input/output_plot.eps'))
def test_nofile(self):
os.remove('del_log.txt')
with nostderrout():
del_log('del_log.txt', makelog='../output/make.log')
logfile_data = open('../output/make.log', 'r').read()
message = messages.note_nofile % 'del_log.txt'
self.assertIn(message, logfile_data)
def test_default_log(self):
with nostderrout():
run_mathematica(program='./input/mathematica_test_script.m')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('mathematica test ended', logfile_data)
self.assertIn('Time : ', logfile_data)
self.assertTrue(os.path.isfile('output_plot.eps'))
def test_executable(self):
with nostderrout():
run_python(program='./input/python_test_script.py',
executable='python')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Test script complete', logfile_data)
self.assertTrue(os.path.isfile('output.txt'))
def test_pdfout(self):
with nostderrout():
run_lyx(program='./input/lyx_test_file.lyx',
pdfout='../output/custom_outfile.pdf')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('LaTeX', logfile_data)
self.assertTrue(os.path.isfile('../output/custom_outfile.pdf'))
self.assertFalse(os.path.isfile('./input/lyx_test_file.pdf'))
def test_default_log(self):
with nostderrout():
run_matlab(program='./input/matlab_test_script.m')
self.assert_proper_output('../output/make.log')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Time : ', logfile_data)
self.assertTrue(os.path.isfile('../output/matlab_test.mat'))
self.assertTrue(os.path.isfile('../output/matlab_test.eps'))
def test_default_log(self):
with nostderrout():
run_rinstall(
package='./input/rinstall_test_package/Ecdat_0.1-6.1.tar.gz')
self.assertTrue(
self.last_line_equals('../output/make.log', '* DONE (Ecdat)\n'))
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Time : ', logfile_data)
def test_option(self):
with nostderrout():
run_rbatch(program='./input/R_test_script.R', option='--no-timing')
logfile_data = open('../output/make.log', 'r').read()
self.assertIn('Test script complete', logfile_data)
self.assertIn('R version', logfile_data)
self.assertNotIn('> proc.time()', logfile_data)
self.assertTrue(os.path.isfile('output.txt'))
def test_single_file(self):
file_list = glob.glob(os.path.join(self.delete_files, '*'))
file_number = len(file_list)
self.assertTrue(os.path.isfile(self.dir_mod))
with nostderrout():
delete_files(self.dir_mod)
file_list = glob.glob(os.path.join(self.delete_files, '*'))
self.assertEqual(len(file_list), file_number - 1)
self.assertFalse(os.path.isfile(self.dir_mod))
def test_set_option(self):
with nostderrout():
set_option(makelog='../customoutput/custommake.log',
temp_dir='../customtemp/',
output_dir='../customoutput/',
manifest='../customoutput/data_file_manifest.log')
clear_output_dirs()
start_make_logging()
run_stata(program='./input/stata_test_script_alt.do')
self.remove_manifest_entry('../customoutput/data_file_manifest.log', 1)
with nostderrout():
check_manifest()
end_make_logging()
self.assertTrue(os.path.isdir('../customoutput/'))
self.assertTrue(os.path.isdir('../customtemp/'))
self.assertTrue(os.path.isfile('../customoutput/custommake.log'))
self.assertTrue(
self.check_results('../customoutput/custommake.log', 1, 0))
def test_independent_log(self):
with nostderrout():
run_rinstall(
package='./input/rinstall_test_package/Ecdat_0.1-6.1.tar.gz',
log='../output/R.log')
self.assertTrue(
self.last_line_equals('../output/make.log', '* DONE (Ecdat)\n'))
self.assertTrue(
self.last_line_equals('../output/R.log', '* DONE (Ecdat)\n'))
def test_custom_directories(self):
self.assertFalse(os.path.isdir('../customoutput/'))
self.assertFalse(os.path.isdir('../customtemp/'))
with nostderrout():
clear_output_dirs('../customoutput/', '../customtemp/')
start_make_logging('../customoutput/make.log')
self.assertTrue(os.path.isdir('../customoutput/'))
self.assertTrue(os.path.isdir('../customtemp/'))
self.assertTrue(os.path.isfile('../customoutput/make.log'))
def test_independent_log(self):
with nostderrout():
run_matlab(program='./input/matlab_test_script.m',
log='../output/matlab.log')
self.assert_proper_output('../output/make.log')
self.assertTrue(os.path.isfile('../output/matlab.log'))
self.assert_proper_output('../output/matlab.log')
self.assertTrue(os.path.isfile('../output/matlab_test.mat'))
self.assertTrue(os.path.isfile('../output/matlab_test.eps'))
