Пример #1
0
 def test_load_extension(self):
     app = NotebookApp()
     stderr = sys.stderr
     sys.stderr = self.devnull
     app.initialize(argv=[])
     sys.stderr = stderr
     load_jupyter_server_extension(app)
Пример #2
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 def test_load_extension(self):
     app = NotebookApp()
     stderr = sys.stderr
     sys.stderr = self.devnull
     app.initialize()
     sys.stderr = stderr
     load_jupyter_server_extension(app)
Пример #3
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    def pwnbook(_parser, cmd, args):  # pragma: no cover
        """
        Start a jupyter notebook with the pwnypack enhanced kernel pre-loaded.
        """

        notebook = NotebookApp(kernel_spec_manager_class=KSM)
        notebook.initialize(args)
        notebook.start()
    def test_load_ordered(self):
        app = NotebookApp()
        app.nbserver_extensions = OrderedDict([('mockextension2',True),('mockextension1',True)])

        app.init_server_extensions()

        assert app.mockII is True, "Mock II should have been loaded"
        assert app.mockI is True, "Mock I should have been loaded"
        assert app.mock_shared == 'II', "Mock II should be loaded after Mock I"
Пример #5
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 def test_load_extension(self):
     app = NotebookApp()
     stderr = sys.stderr
     sys.stderr = self.devnull
     app.initialize()
     sys.stderr = stderr
     web_app = app.web_app
     prev = len(web_app.handlers)
     load_jupyter_server_extension(app)
     assert len(web_app.handlers) > prev
Пример #6
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def run_server(target, jupyter_args=None, verbosity=1):
    RPZKernelManager.rpz_target = target
    RPZKernelManager.rpz_verbosity = verbosity

    if not jupyter_args:
        jupyter_args = []

    logger.info("Starting Jupyter notebook")
    NotebookApp.launch_instance(argv=jupyter_args,
                                kernel_manager_class=RPZMappingKernelManager)
Пример #7
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 def test_load_extension(self):
     app = NotebookApp()
     stderr = sys.stderr
     sys.stderr = self.devnull
     app.initialize()
     sys.stderr = stderr
     web_app = app.web_app
     prev = len(web_app.handlers)
     load_jupyter_server_extension(app)
     assert len(web_app.handlers) > prev
Пример #8
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 def test_add_handlers(self):
     app = NotebookApp()
     stderr = sys.stderr
     sys.stderr = self.devnull
     app.initialize()
     sys.stderr = stderr
     web_app = app.web_app
     prev = len(web_app.handlers)
     add_handlers(web_app, {})
     assert len(web_app.handlers) > prev
Пример #9
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 def test_add_handlers(self):
     app = NotebookApp()
     stderr = sys.stderr
     sys.stderr = self.devnull
     app.initialize()
     sys.stderr = stderr
     web_app = app.web_app
     prev = len(web_app.handlers)
     add_handlers(web_app, {})
     assert len(web_app.handlers) > prev
Пример #10
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def dask_setup(scheduler):
    app = NotebookApp()
    ip = socket.gethostbyname(socket.gethostname())
    app.ip = "0.0.0.0"
    app.initialize([])
    Run.get_context().log(
        "jupyter-url",
        "http://" + ip + ":" + str(app.port) + "/?token=" + app.token)
    Run.get_context().log("jupyter-port", app.port)
    Run.get_context().log("jupyter-token", app.token)
    Run.get_context().log("jupyter-ip", ip)
Пример #11
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    def start(self):
        # Save current config for the node script.
        config = dict(baseUrl=self.connection_url, token=self.token)
        with open('config.json', 'w') as fid:
            json.dump(config, fid)

        messaging_pipeline = Queue()
        messaging_pipeline.put(config)
        p1 = Process(target=start_node_server, args=(messaging_pipeline, ))
        p1.start()

        NotebookApp.start(self)
def nb_app():
    from notebook.notebookapp import NotebookApp
    app = NotebookApp()
    app.log_level = logging.DEBUG
    app.ip = '127.0.0.1'
    app.token = ''
    app.password = ''
    app.disable_check_xsrf = True
    app.initialize()
    return app.web_app
Пример #13
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def test_ignores_tasks_whose_source_is_not_a_file(monkeypatch, capsys,
                                                  tmp_directory,
                                                  no_sys_modules_cache):
    """
    Context: jupyter extension only applies to tasks whose source is a script,
    otherwise it will break, trying to get the source location. This test
    checks that a SQLUpload (whose source is a data file) task is ignored
    from the extension
    """
    monkeypatch.setattr(sys, 'argv', ['jupyter'])
    spec = {
        'meta': {
            'extract_product': False,
            'extract_upstream': False,
            'product_default_class': {
                'SQLUpload': 'SQLiteRelation'
            }
        },
        'clients': {
            'SQLUpload': 'db.get_client',
            'SQLiteRelation': 'db.get_client'
        },
        'tasks': [{
            'source': 'some_file.csv',
            'name': 'task',
            'class': 'SQLUpload',
            'product': ['some_table', 'table']
        }]
    }

    with open('pipeline.yaml', 'w') as f:
        yaml.dump(spec, f)

    Path('db.py').write_text("""
from ploomber.clients import SQLAlchemyClient

def get_client():
    return SQLAlchemyClient('sqlite://')
""")

    Path('file.py').touch()

    app = NotebookApp()
    app.initialize()
    app.contents_manager.get('file.py')

    out, err = capsys.readouterr()

    assert 'Traceback' not in err
Пример #14
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def nb_app():
    sys.argv = ["--port=6005", "--ip=127.0.0.1", "--no-browser", "--debug"]
    from notebook.notebookapp import NotebookApp
    app = NotebookApp()
    app.log_level = logging.DEBUG
    app.ip = '127.0.0.1'
    app.token = ''
    app.password = ''
    app.disable_check_xsrf = True
    app.initialize()
    return app.web_app
Пример #15
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            def run_notebook():
                app = NotebookApp.instance()

                # Treat IPYTHON_ARGUMENTS from settings
                ipython_arguments = self.get_ipython_arguments(options)
                if 'django_extensions.management.notebook_extension' not in ipython_arguments:
                    ipython_arguments.extend([
                        '--ext',
                        'django_extensions.management.notebook_extension'
                    ])

                # Treat NOTEBOOK_ARGUMENTS from settings
                notebook_arguments = self.get_notebook_arguments(options)
                if no_browser and '--no-browser' not in notebook_arguments:
                    notebook_arguments.append('--no-browser')
                if '--notebook-dir' not in notebook_arguments:
                    notebook_arguments.extend(['--notebook-dir', '.'])

                # IPython < 3 passes through kernel args from notebook CLI
                if release.version_info[0] < 3:
                    notebook_arguments.extend(ipython_arguments)

                app.initialize(notebook_arguments)

                # IPython >= 3 uses kernelspecs to specify kernel CLI args
                if release.version_info[0] >= 3:
                    display_name = getattr(settings,
                                           'IPYTHON_KERNEL_DISPLAY_NAME',
                                           "Django Shell-Plus")
                    install_kernel_spec(app, display_name, ipython_arguments)

                app.start()
Пример #16
0
def n_action(option, opt_str, value, parser):
    args = [arg for arg in sys.argv[1:] if arg != opt_str]
    options, args = parser.parse_args(args)
    sys.argv = ['notebook']
    try:  # Jupyter/IPython >= 4.0
        from notebook.notebookapp import NotebookApp
        jupyter = True
    except:  # IPython <4.0
        from IPython.html.notebookapp import NotebookApp
        jupyter = False

    if jupyter:
        ipython_dir = param.resolve_path('platform/ipython',
                                         path_to_file=False)
        os.environ['IPYTHONDIR'] = ipython_dir
        config_dir = param.resolve_path('platform/jupyter', path_to_file=False)
        NotebookApp.config_dir = config_dir
    else:
        if options.Profile is None:
            config_dir = param.resolve_path('platform/ipython/',
                                            path_to_file=False)
            NotebookApp.ipython_dir = config_dir
        else:
            NotebookApp.profile = options.Profile
    if options.IP is not None:
        NotebookApp.ip = options.IP
    if options.Port is not None:
        NotebookApp.port = options.Port
    NotebookApp().launch_instance()
    global something_executed
    something_executed = True
Пример #17
0
 def start_thread():
     if 'asyncio' in sys.modules:
         import asyncio
         asyncio.set_event_loop(asyncio.new_event_loop())
     app = cls.notebook = NotebookApp(
         port=cls.port,
         port_retries=0,
         open_browser=False,
         config_dir=cls.config_dir,
         data_dir=cls.data_dir,
         runtime_dir=cls.runtime_dir,
         notebook_dir=cls.notebook_dir,
         base_url=cls.url_prefix,
         config=config,
         allow_root=True,
         token=cls.token,
     )
     # don't register signal handler during tests
     app.init_signal = lambda: None
     # clear log handlers and propagate to root for nose to capture it
     # needs to be redone after initialize, which reconfigures logging
     app.log.propagate = True
     app.log.handlers = []
     app.initialize(argv=[])
     app.log.propagate = True
     app.log.handlers = []
     loop = IOLoop.current()
     loop.add_callback(started.set)
     try:
         app.start()
     finally:
         # set the event, so failure to start doesn't cause a hang
         started.set()
         app.session_manager.close()
def get_nbextensions_path():
    """
    Return the nbextensions search path

    gets the search path for
      - the current NotebookApp instance
    or, if we can't instantiate one
      - the default config used, found by spawning a subprocess
    """
    # Attempt to get the path for the currently-running config, or the default
    # if one isn't running.
    # If there's already a non-NotebookApp traitlets app running, e.g. when
    # we're inside an IPython kernel there's a KernelApp instantiated, then
    # attempting to get a NotebookApp instance will raise a
    # MultipleInstanceError.
    try:
        return NotebookApp.instance().nbextensions_path
    except MultipleInstanceError:
        # So, we spawn a new python process to get paths for the default config
        cmd = "from {0} import {1}; [print(p) for p in {1}()]".format(
            get_nbextensions_path.__module__, get_nbextensions_path.__name__)

        return subprocess.check_output([
            sys.executable, '-c', cmd
        ]).decode(sys.stdout.encoding).split('\n')
            def run_notebook():
                app = NotebookApp.instance()

                # Treat IPYTHON_ARGUMENTS from settings
                ipython_arguments = getattr(settings, 'IPYTHON_ARGUMENTS', [])
                if 'django_extensions.management.notebook_extension' not in ipython_arguments:
                    ipython_arguments.extend(['--ext', 'django_extensions.management.notebook_extension'])

                # Treat NOTEBOOK_ARGUMENTS from settings
                notebook_arguments = getattr(settings, 'NOTEBOOK_ARGUMENTS', [])
                if no_browser and '--no-browser' not in notebook_arguments:
                    notebook_arguments.append('--no-browser')
                if '--notebook-dir' not in notebook_arguments:
                    notebook_arguments.extend(['--notebook-dir', '.'])

                # IPython < 3 passes through kernel args from notebook CLI
                if release.version_info[0] < 3:
                    notebook_arguments.extend(ipython_arguments)

                app.initialize(notebook_arguments)

                # IPython >= 3 uses kernelspecs to specify kernel CLI args
                if release.version_info[0] >= 3:
                    display_name = getattr(settings, 'IPYTHON_KERNEL_DISPLAY_NAME', "Django Shell-Plus")
                    install_kernel_spec(app, display_name, ipython_arguments)

                app.start()
            def run_notebook():
                app = NotebookApp.instance()

                # Treat IPYTHON_ARGUMENTS from settings
                ipython_arguments = self.get_ipython_arguments(options)
                if "django_extensions.management.notebook_extension" not in ipython_arguments:
                    ipython_arguments.extend(["--ext", "django_extensions.management.notebook_extension"])

                # Treat NOTEBOOK_ARGUMENTS from settings
                notebook_arguments = self.get_notebook_arguments(options)
                if no_browser and "--no-browser" not in notebook_arguments:
                    notebook_arguments.append("--no-browser")
                if "--notebook-dir" not in notebook_arguments:
                    notebook_arguments.extend(["--notebook-dir", "."])

                # IPython < 3 passes through kernel args from notebook CLI
                if release.version_info[0] < 3:
                    notebook_arguments.extend(ipython_arguments)

                app.initialize(notebook_arguments)

                # IPython >= 3 uses kernelspecs to specify kernel CLI args
                if release.version_info[0] >= 3:
                    display_name = getattr(settings, "IPYTHON_KERNEL_DISPLAY_NAME", "Django Shell-Plus")
                    install_kernel_spec(app, display_name, ipython_arguments)

                app.start()
Пример #21
0
def main():
    """Run main."""
    opt = parse_cmd_line()
    if opt.serve:
        # pylint: disable=import-outside-toplevel
        from imjoy.server import start_server

        start_server(opt)
    elif opt.jupyter:
        sys.argv = sys.argv[:1]
        sys.argc = 1
        # pylint: disable=import-outside-toplevel
        from notebook.notebookapp import NotebookApp

        kwargs = {
            "open_browser": False,
            "allow_origin": opt.allow_origin,
            "ip": opt.host,
            "notebook_dir": opt.workspace,
            "port": int(opt.port),
            "tornado_settings": {
                "headers": {
                    "Access-Control-Allow-Origin": opt.allow_origin,
                    "Content-Security-Policy": opt.content_security_policy,
                }
            },
        }

        if not opt.token:
            if not opt.random_token:
                opt.token = read_or_generate_token()
                kwargs["token"] = opt.token
        else:
            kwargs["token"] = opt.token

        if opt.insecure:
            kwargs["token"] = ""
            kwargs["disable_check_xsrf"] = True
            logger.warning(
                "Running Jupyter notebooks with --insecure flag, "
                "please do not use it for production."
            )

        app = NotebookApp.instance(**kwargs)
        app.initialize()
        if app.port != int(opt.port):
            print(f"\nWARNING: using a different port: {app.port}.\n")
        write_token(app.token)
        app._token_generated = True  # pylint: disable=protected-access
        app.start()

    else:
        print(
            "\nNote: We have migrated the backend of the ImJoy Engine."
            "You can start the Jupyter backend via`imjoy --jupyter`.\n\n"
            "Or, you can start the socketio backend server via `imjoy --serve`\n"
        )
def main():
    current_directory = os.path.dirname(os.path.realpath(__file__))
    TestPlugin.app = NotebookApp(open_browser=False, notebook_dir=current_directory)
    TestPlugin.app.initialize()
    TestPlugin.mock_docker = MagicMock()

    io_loop = IOLoop.current()
    io_loop.call_later(1, _run_tests_in_thread)
    with patch("docker.from_env", return_value=TestPlugin.mock_docker):
        TestPlugin.app.start()
Пример #23
0
        def run_notebook():
            app = NotebookApp.instance()

            # Treat IPYTHON_ARGUMENTS from settings
            ipython_arguments = self.get_ipython_arguments(options)
            if 'django_extensions.management.notebook_extension' not in ipython_arguments:
                ipython_arguments.extend([
                    '--ext', 'django_extensions.management.notebook_extension'
                ])

            # Treat NOTEBOOK_ARGUMENTS from settings
            notebook_arguments = self.get_notebook_arguments(options)
            if no_browser and '--no-browser' not in notebook_arguments:
                notebook_arguments.append('--no-browser')
            if '--notebook-dir' not in notebook_arguments and not any(
                    e.startswith('--notebook-dir=')
                    for e in notebook_arguments):
                notebook_arguments.extend(['--notebook-dir', '.'])

            # IPython < 3 passes through kernel args from notebook CLI
            if release.version_info[0] < 3:
                notebook_arguments.extend(ipython_arguments)

            app.initialize(notebook_arguments)

            # IPython >= 3 uses kernelspecs to specify kernel CLI args
            if release.version_info[0] >= 3:
                ksm = app.kernel_spec_manager
                for kid, ks in self.generate_kernel_specs(
                        app, ipython_arguments).items():
                    roots = [
                        os.path.dirname(ks.resource_dir), ksm.user_kernel_dir
                    ]
                    success = False
                    for root in roots:
                        kernel_dir = os.path.join(root, kid)
                        try:
                            if not os.path.exists(kernel_dir):
                                os.makedirs(kernel_dir)

                            with open(os.path.join(kernel_dir, 'kernel.json'),
                                      'w') as f:
                                f.write(ks.to_json())

                            success = True
                            break
                        except OSError:
                            continue

                    if not success:
                        raise CommandError(
                            "Could not write kernel %r in directories %r" %
                            (kid, roots))

            app.start()
    def test_merge_config(self):
        # enabled at sys level
        mock_sys = self._inject_mock_extension('mockext_sys')
        # enabled at sys, disabled at user
        mock_both = self._inject_mock_extension('mockext_both')
        # enabled at user
        mock_user = self._inject_mock_extension('mockext_user')
        # enabled at Python
        mock_py = self._inject_mock_extension('mockext_py')

        toggle_serverextension_python('mockext_sys', enabled=True, user=False)
        toggle_serverextension_python('mockext_user', enabled=True, user=True)
        toggle_serverextension_python('mockext_both', enabled=True, user=False)
        toggle_serverextension_python('mockext_both', enabled=False, user=True)

        app = NotebookApp(nbserver_extensions={'mockext_py': True})
        app.init_server_extensions()

        assert mock_user.loaded
        assert mock_sys.loaded
        assert mock_py.loaded
        assert not mock_both.loaded
Пример #25
0
def start_notebook(verbose, filename='kpop.ipynb'):
    try:
        from notebook.notebookapp import NotebookApp
        from jupyter_client import KernelManager
    except ImportError:
        raise ImportError(
            'you must install the notebook module to run this command.\n'
            '\nRun one of the following commands:\n'
            '   $ pip3 install notebook\n'
            '   $ pip3 install kpop[all]'
        )

    file_path = os.path.join(os.getcwd(), filename)
    if not os.path.exists(file_path):
        create_default_notebook_file(file_path)

    sys.argv[:] = ['notebook', 'kpop.ipynb']

    NotebookApp.launch_instance(
        kernel_manager=KernelManager,
        kernel_name='python',
    )
Пример #26
0
    def pwnbook(_parser, cmd, args):  # pragma: no cover
        """
        Start a jupyter notebook with the pwnypack enhanced kernel pre-loaded.
        """

        notebook = NotebookApp(kernel_spec_manager_class=KSM)
        notebook.initialize(args)
        notebook.start()
 def get_server_kwargs(cls, **overrides):
     kwargs = dict(
         port=cls.port,
         port_retries=0,
         open_browser=False,
         runtime_dir=cls.jupyter_dirs['server']['runtime'],
         notebook_dir=cls.jupyter_dirs['server']['notebook'],
         base_url=cls.url_prefix,
         config=cls.config,
     )
     # disable auth-by-default, introduced in notebook PR #1831
     if 'token' in NotebookApp.class_trait_names():
         kwargs['token'] = ''
     kwargs.update(overrides)
     return kwargs
Пример #28
0
    def project(self):
        # 1. configuration option passed explicitly
        # 2. from notebooks dir
        # 3. from cwd
        if self.ballet_yml_path:
            return Project.from_path(self.ballet_yml_path)

        path = NotebookApp.instance().notebook_dir
        with fy.suppress(Exception):
            return Project.from_path(path)

        with fy.suppress(Exception):
            return Project.from_cwd()

        raise ConfigurationError('Could not detect Ballet project')
Пример #29
0
 def get_server_kwargs(cls, **overrides):
     kwargs = dict(
         port=cls.port,
         port_retries=0,
         open_browser=False,
         runtime_dir=cls.jupyter_dirs['server']['runtime'],
         notebook_dir=cls.jupyter_dirs['server']['notebook'],
         base_url=cls.url_prefix,
         config=cls.config,
     )
     # disable auth-by-default, introduced in notebook PR #1831
     if 'token' in NotebookApp.class_trait_names():
         kwargs['token'] = ''
     kwargs.update(overrides)
     return kwargs
Пример #30
0
 def _get_r_executable():
     try:
         # get notebook app
         from notebook.notebookapp import NotebookApp
         nbapp = NotebookApp.instance()
         # get R executable:
         kernel_name = nbapp.kernel_manager.default_kernel_name
         if kernel_name:
             kernel_spec = nbapp.kernel_spec_manager.get_kernel_spec(
                 kernel_name)
             # nb_conda_kernels has conda env prefix at idx 4
             return '{}/bin/R'.format(kernel_spec.argv[4])
     except Exception:
         nbapp.log.warning(
             'Error when trying to get R executable from kernel')
     return 'R'
Пример #31
0
    def run_notebook(no_browser=False, display_name='notebook'):
        app = NotebookApp.instance()

        ipython_arguments = []      # Will implement to set specific IPython configs
        notebook_arguments = []     # Will implement to set specific notebook configs

        if no_browser is True:
            notebook_arguments.append('--no-browser')

        if '--notebook-dir' not in notebook_arguments:
            notebook_arguments.extend(['--notebook-dir', '.'])

        install_kernel_spec(app, display_name, ipython_arguments)

        app.initialize(notebook_arguments)
        app.start()
Пример #32
0
def start_notebook(args, l, rc):

    from notebook.notebookapp import NotebookApp
    import sys

    sys.argv = ['ambry']
    app = NotebookApp.instance()
    app._library = l
    app.contents_manager_class = 'ambry_ui.jupyter.AmbryContentsManager'
    app.open_browser = not args.no_browser
    app.ip = args.host
    if args.port is not None:
        app.port = int(args.port)
    app.initialize(None)

    app.start()
Пример #33
0
    def run_notebook(no_browser=False, display_name='notebook'):
        app = NotebookApp.instance()

        ipython_arguments = [
        ]  # Will implement to set specific IPython configs
        notebook_arguments = [
        ]  # Will implement to set specific notebook configs

        if no_browser is True:
            notebook_arguments.append('--no-browser')

        if '--notebook-dir' not in notebook_arguments:
            notebook_arguments.extend(['--notebook-dir', '.'])

        install_kernel_spec(app, display_name, ipython_arguments)

        app.initialize(notebook_arguments)
        app.start()
Пример #34
0
    def test_basic(self):

        from notebook.notebookapp import NotebookApp
        import sys

        l = self.library()
        b = l.new_bundle(source='example.com', dataset='test', assignment_class='self')
        l.commit()

        sys.argv = ['ambry']
        app = NotebookApp.instance()
        app._library = l
        app.contents_manager_class = 'ambry_ui.jupyter.AmbryContentsManager'
        app.initialize(None)

        cm = app.contents_manager

        self.assertEqual('example.com', cm.get('')['content'][0]['path'])

        self.assertEqual('/example.com/test-0.0.1/bundle.yaml',  cm.get(b.identity.cache_key)['content'][0]['path'])
Пример #35
0
    def handle(self, arguments):
        try:
            from notebook.notebookapp import NotebookApp
        except ImportError:  # pragma: no cover
            self.parser.error("notebook not found. Please install it")
        else:
            extension = "corral.libs.notebook_extension"

            pipeline = setup.load_pipeline_setup()

            app = NotebookApp.instance()
            dir_name = conf.PACKAGE
            display_name = pipeline.name
            settings_module = conf.CORRAL_SETTINGS_MODULE

            ipython_arguments = ['--ext', extension]

            app.initialize(arguments)
            self.install_kernel_spec(app, dir_name, display_name,
                                     settings_module, ipython_arguments)
            app.start()
Пример #36
0
    def __call__(self, args):
        kwargs = {}
        from notebook.notebookapp import NotebookApp

        print(
            "You must choose a password so that others cannot connect to "
            "your notebook."
        )
        pw = ytcfg.get("yt", "notebook_password")
        if len(pw) == 0 and not args.no_password:
            import IPython.lib

            pw = IPython.lib.passwd()
            print("If you would like to use this password in the future,")
            print("place a line like this inside the [yt] section in your")
            print("yt configuration file at ~/.config/yt/yt.toml")
            print()
            print(f"notebook_password = {pw}")
            print()
        elif args.no_password:
            pw = None
        if args.port != 0:
            kwargs["port"] = int(args.port)
        if args.profile is not None:
            kwargs["profile"] = args.profile
        if pw is not None:
            kwargs["password"] = pw
        app = NotebookApp(open_browser=args.open_browser, **kwargs)
        app.initialize(argv=[])
        print()
        print("***************************************************************")
        print()
        print("The notebook is now live at:")
        print()
        print(f"     http://127.0.0.1:{app.port}/")
        print()
        print("Recall you can create a new SSH tunnel dynamically by pressing")
        print(f"~C and then typing -L{app.port}:localhost:{app.port}")
        print("where the first number is the port on your local machine. ")
        print()
        print(
            "If you are using %s on your machine already, try "
            "-L8889:localhost:%s" % (app.port, app.port)
        )
        print()
        print("***************************************************************")
        print()
        app.start()
Пример #37
0
    def handle(self, arguments):
        try:
            from notebook.notebookapp import NotebookApp
        except ImportError:
            self.parser.error("notebook not found. Please install it")
        else:
            extension = "corral.libs.notebook_extension"

            pipeline = setup.load_pipeline_setup()

            app = NotebookApp.instance()
            dir_name = conf.PACKAGE
            display_name = pipeline.name
            settings_module = conf.CORRAL_SETTINGS_MODULE

            ipython_arguments = ['--ext', extension]

            app.initialize(arguments)
            self.install_kernel_spec(
                app, dir_name, display_name,
                settings_module, ipython_arguments)
            app.start()
Пример #38
0
def launch_notebook(argv=None):
    """
    Launch a Jupyter Notebook, with custom Untitled filenames and
    a prepopulated first cell with necessary boilerplate code.

    Notes
    -----
    To populate the first cell, the function `new_notebook` imported
    in notebook.services.contents needs to be monkey patched. Dirty
    but functional. Same thing could be achieved with custom.js or
    a ContentsManager subclass, but this is easier!
    """
    try:
        import nbformat.v4 as nbf
        from notebook.notebookapp import NotebookApp
        from notebook.services.contents import manager
        from traitlets.config import Config
    except ImportError:
        sys.exit("ERROR: Jupyter Notebook not installed in this environment. "
                 "Try with `conda install ipython jupyter notebook`")
    else:
        nbf._original_new_notebook = nbf.new_notebook
        def _prepopulate_nb_patch():
            nb = nbf._original_new_notebook()
            cell = nbf.new_code_cell("# Run this cell to complete Chimera initialization\n"
                                     "from pychimera import enable_chimera, enable_chimera_inline, chimera_view\n"
                                     "enable_chimera()\nenable_chimera_inline()\nimport chimera")
            nb['cells'].append(cell)
            return nb
        manager.new_notebook = _prepopulate_nb_patch
        app = NotebookApp()
        c = Config()
        c.FileContentsManager.untitled_notebook = "Untitled PyChimera Notebook"
        app.update_config(c)
        app.initialize(argv)
        app.start()
Пример #39
0
    def test_get_labconfig(self):
        # enabled at sys level
        self._inject_mock_extension('mockext_sys')
        install_labextension_python('mockext_sys', user=False)
        # enabled at sys, disabled at user
        self._inject_mock_extension('mockext_both')
        install_labextension_python('mockext_both', user=False)
        install_labextension_python('mockext_both', user=True)
        # enabled at user
        self._inject_mock_extension('mockext_user')
        install_labextension_python('mockext_user', user=True)

        enable_labextension_python('mockext_sys', user=False)
        enable_labextension_python('mockext_user', user=True)
        enable_labextension_python('mockext_both', user=False)
        disable_labextension_python('mockext_both', user=True)

        app = NotebookApp()
        config = get_labconfig(app).get('labextensions')

        assert config['mockext_user']['enabled']
        assert config['mockext_sys']['enabled']
        assert not config['mockext_both']['enabled']
Пример #40
0
def get_nbextensions_path():
    """
    Return the nbextensions search path

    gets the search path for
      - the current NotebookApp instance
    or, if we can't instantiate one
      - the default config used, found by spawning a subprocess
    """
    # Attempt to get the path for the currently-running config, or the default
    # if one isn't running.
    # If there's already a non-NotebookApp traitlets app running, e.g. when
    # we're inside an IPython kernel there's a KernelApp instantiated, then
    # attempting to get a NotebookApp instance will raise a
    # MultipleInstanceError.
    try:
        return NotebookApp.instance().nbextensions_path
    except MultipleInstanceError:
        # So, we spawn a new python process to get paths for the default config
        cmd = "from {0} import {1}; [print(p) for p in {1}()]".format(
            get_nbextensions_path.__module__, get_nbextensions_path.__name__)

        return subprocess.check_output([sys.executable, '-c', cmd]).decode(
            sys.stdout.encoding).split('\n')
 def _log_default(self):
     """wrap loggers for this application."""
     return wrap_logger_handlers(NotebookApp._log_default(self))