def get_volume(self, offset, offset_inner=None):
if offset_inner == None:
offset_inner = -pow(10., 38)
cnt = 0.
scl = Scaler(self._voxels)
vo = scl.scale(self._voxels.shape[0]*2, self._voxels.shape[1]*2, self._voxels.shape[2]*2).value
print vo.shape
for val in vo.flatten():
if (val < offset) and (val > offset_inner):
cnt += 1.
return cnt*(self.spc/2)**3
def get_voxels(self, refine=1):
scaler = Scaler(self._voxels)
dims = (self._voxels.shape[0]*refine,self._voxels.shape[1]*refine,self._voxels.shape[2]*refine)
return scaler.scale(*dims).value
