def test_space_delimiter(self):
"Test space delimiter"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter(asbytes(" "))(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "", "5"]))
test = LineSplitter(asbytes(" "))(strg)
assert_equal(test, asbytes_nested(["1 2 3 4", "5"]))
def test_space_delimiter(self):
"Test space delimiter"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter(asbytes(' '))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5']))
test = LineSplitter(asbytes(' '))(strg)
assert_equal(test, asbytes_nested(['1 2 3 4', '5']))
def test_no_delimiter(self):
"Test LineSplitter w/o delimiter"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter()(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "5"]))
test = LineSplitter("")(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "5"]))
def test_set_elements(self):
base = self.base.copy()
# Set an element to mask .....................
mbase = base.view(mrecarray).copy()
mbase[-2] = masked
assert_equal(
mbase._mask.tolist(),
np.array([(0, 0, 0), (1, 1, 1), (0, 0, 0), (1, 1, 1), (1, 1, 1)],
dtype=bool))
# Used to be mask, now it's recordmask!
assert_equal(mbase.recordmask, [0, 1, 0, 1, 1])
# Set slices .................................
mbase = base.view(mrecarray).copy()
mbase[:2] = (5, 5, 5)
assert_equal(mbase.a._data, [5, 5, 3, 4, 5])
assert_equal(mbase.a._mask, [0, 0, 0, 0, 1])
assert_equal(mbase.b._data, [5., 5., 3.3, 4.4, 5.5])
assert_equal(mbase.b._mask, [0, 0, 0, 0, 1])
assert_equal(mbase.c._data,
asbytes_nested(['5', '5', 'three', 'four', 'five']))
assert_equal(mbase.b._mask, [0, 0, 0, 0, 1])
mbase = base.view(mrecarray).copy()
mbase[:2] = masked
assert_equal(mbase.a._data, [1, 2, 3, 4, 5])
assert_equal(mbase.a._mask, [1, 1, 0, 0, 1])
assert_equal(mbase.b._data, [1.1, 2.2, 3.3, 4.4, 5.5])
assert_equal(mbase.b._mask, [1, 1, 0, 0, 1])
assert_equal(mbase.c._data,
asbytes_nested(['one', 'two', 'three', 'four', 'five']))
assert_equal(mbase.b._mask, [1, 1, 0, 0, 1])
def test_no_delimiter(self):
"Test LineSplitter w/o delimiter"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter()(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '5']))
test = LineSplitter('')(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '5']))
def test_rpartition(self):
P = self.A.rpartition(asbytes_nested(['3', 'M']))
assert_(issubclass(P.dtype.type, np.string_))
assert_array_equal(P, asbytes_nested([
[('', '', ' abc '), ('', '', '')],
[('12', '3', '45'), ('', 'M', 'ixedCase')],
[('123 \t ', '3', '45 \0 '), ('', '', 'UPPER')]]))
def test_partition(self):
P = self.A.partition(asbytes_nested(['3', 'M']))
tgt = asbytes_nested([[(' abc ', '', ''), ('', '', '')],
[('12', '3', '45'), ('', 'M', 'ixedCase')],
[('12', '3', ' \t 345 \0 '), ('UPPER', '', '')]])
assert_(issubclass(P.dtype.type, np.string_))
assert_array_equal(P, tgt)
def test_variable_fixed_width(self):
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter((3, 6, 6, 3))(strg)
assert_equal(test, asbytes_nested(['1', '3', '4 5', '6']))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter((6, 6, 9))(strg)
assert_equal(test, asbytes_nested(['1', '3 4', '5 6']))
def test_partition(self):
if sys.version_info >= (2, 5):
P = self.A.partition(asbytes_nested(['3', 'M']))
assert issubclass(P.dtype.type, np.string_)
assert_array_equal(P, asbytes_nested([
[(' abc ', '', ''), ('', '', '')],
[('12', '3', '45'), ('', 'M', 'ixedCase')],
[('12', '3', ' \t 345 \0 '), ('UPPER', '', '')]]))
def test_rpartition(self):
P = self.A.rpartition(asbytes_nested(['3', 'M']))
assert_(issubclass(P.dtype.type, np.string_))
assert_array_equal(
P,
asbytes_nested([[('', '', ' abc '), ('', '', '')],
[('12', '3', '45'), ('', 'M', 'ixedCase')],
[('123 \t ', '3', '45 \0 '), ('', '', 'UPPER')]]))
def test_tab_delimiter(self):
"Test tab delimiter"
strg = asbytes(" 1\t 2\t 3\t 4\t 5 6")
test = LineSplitter(asbytes("\t"))(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "5 6"]))
strg = asbytes(" 1 2\t 3 4\t 5 6")
test = LineSplitter(asbytes("\t"))(strg)
assert_equal(test, asbytes_nested(["1 2", "3 4", "5 6"]))
def test_partition(self):
if sys.version_info >= (2, 5):
P = self.A.partition(asbytes_nested(['3', 'M']))
assert issubclass(P.dtype.type, np.string_)
assert_array_equal(P, asbytes_nested([
[(' abc ', '', ''), ('', '', '')],
[('12', '3', '45'), ('', 'M', 'ixedCase')],
[('12', '3', ' \t 345 \0 '), ('UPPER', '', '')]]))
def test_tab_delimiter(self):
"Test tab delimiter"
strg = asbytes(" 1\t 2\t 3\t 4\t 5 6")
test = LineSplitter(asbytes('\t'))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '5 6']))
strg = asbytes(" 1 2\t 3 4\t 5 6")
test = LineSplitter(asbytes('\t'))(strg)
assert_equal(test, asbytes_nested(['1 2', '3 4', '5 6']))
def test_tab_delimiter(self):
"Test tab delimiter"
strg = asbytes(" 1\t 2\t 3\t 4\t 5 6")
test = LineSplitter(asbytes('\t'))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '5 6']))
strg = asbytes(" 1 2\t 3 4\t 5 6")
test = LineSplitter(asbytes('\t'))(strg)
assert_equal(test, asbytes_nested(['1 2', '3 4', '5 6']))
def test_variable_fixed_width(self):
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter((3, 6, 6, 3))(strg)
assert_equal(test, asbytes_nested(["1", "3", "4 5", "6"]))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter((6, 6, 9))(strg)
assert_equal(test, asbytes_nested(["1", "3 4", "5 6"]))
def test_variable_fixed_width(self):
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter((3, 6, 6, 3))(strg)
assert_equal(test, asbytes_nested(['1', '3', '4 5', '6']))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter((6, 6, 9))(strg)
assert_equal(test, asbytes_nested(['1', '3 4', '5 6']))
def test_other_delimiter(self):
"Test LineSplitter on delimiter"
strg = asbytes("1,2,3,4,,5")
test = LineSplitter(asbytes(','))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5']))
#
strg = asbytes(" 1,2,3,4,,5 # test")
test = LineSplitter(asbytes(','))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5']))
def test_other_delimiter(self):
"Test LineSplitter on delimiter"
strg = asbytes("1,2,3,4,,5")
test = LineSplitter(asbytes(','))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5']))
#
strg = asbytes(" 1,2,3,4,,5 # test")
test = LineSplitter(asbytes(','))(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5']))
def test_other_delimiter(self):
"Test LineSplitter on delimiter"
strg = asbytes("1,2,3,4,,5")
test = LineSplitter(asbytes(","))(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "", "5"]))
#
strg = asbytes(" 1,2,3,4,,5 # test")
test = LineSplitter(asbytes(","))(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "", "5"]))
def test_lapack(self):
f = FindDependenciesLdd()
depsLibg2c = f.grep_dependencies(lapack_lite.__file__,
asbytes_nested(['libg2c']))
depsLibgfortran = f.grep_dependencies(lapack_lite.__file__,
asbytes_nested(['libgfortran']))
self.assertFalse(len(depsLibg2c)*len(depsLibgfortran) > 0,
"""Both g77 and gfortran runtimes linked in lapack_lite ! This is likely to
cause random crashes and wrong results. See numpy INSTALL.txt for more
information.""")
def test_strip(self):
assert issubclass(self.A.strip().dtype.type, np.string_)
assert_array_equal(
self.A.strip(), asbytes_nested([["abc", ""], ["12345", "MixedCase"], ["123 \t 345", "UPPER"]])
)
assert_array_equal(
self.A.strip(asbytes_nested(["15", "EReM"])),
asbytes_nested([[" abc ", ""], ["234", "ixedCas"], ["23 \t 345 \x00", "UPP"]]),
)
assert issubclass(self.B.strip().dtype.type, np.unicode_)
assert_array_equal(self.B.strip(), [["\u03a3", ""], ["12345", "MixedCase"], ["123 \t 345", "UPPER"]])
def test_constant_fixed_width(self):
"Test LineSplitter w/ fixed-width fields"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter(3)(strg)
assert_equal(test, asbytes_nested(["1", "2", "3", "4", "", "5", ""]))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter(20)(strg)
assert_equal(test, asbytes_nested(["1 3 4 5 6"]))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter(30)(strg)
assert_equal(test, asbytes_nested(["1 3 4 5 6"]))
def test_constant_fixed_width(self):
"Test LineSplitter w/ fixed-width fields"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter(3)(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5', '']))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter(20)(strg)
assert_equal(test, asbytes_nested(['1 3 4 5 6']))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter(30)(strg)
assert_equal(test, asbytes_nested(['1 3 4 5 6']))
def test_constant_fixed_width(self):
"Test LineSplitter w/ fixed-width fields"
strg = asbytes(" 1 2 3 4 5 # test")
test = LineSplitter(3)(strg)
assert_equal(test, asbytes_nested(['1', '2', '3', '4', '', '5', '']))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter(20)(strg)
assert_equal(test, asbytes_nested(['1 3 4 5 6']))
#
strg = asbytes(" 1 3 4 5 6# test")
test = LineSplitter(30)(strg)
assert_equal(test, asbytes_nested(['1 3 4 5 6']))
def test_lstrip(self):
tgt = asbytes_nested([['abc ', ''], ['12345', 'MixedCase'],
['123 \t 345 \0 ', 'UPPER']])
assert_(issubclass(self.A.lstrip().dtype.type, np.string_))
assert_array_equal(self.A.lstrip(), tgt)
tgt = asbytes_nested([[' abc', ''], ['2345', 'ixedCase'],
['23 \t 345 \x00', 'UPPER']])
assert_array_equal(self.A.lstrip(asbytes_nested(['1', 'M'])), tgt)
tgt = [[sixu('\u03a3 '), ''], ['12345', 'MixedCase'],
['123 \t 345 \0 ', 'UPPER']]
assert_(issubclass(self.B.lstrip().dtype.type, np.unicode_))
assert_array_equal(self.B.lstrip(), tgt)
def test_rstrip(self):
assert issubclass(self.A.rstrip().dtype.type, np.string_)
assert_array_equal(
self.A.rstrip(),
asbytes_nested([[' abc', ''], ['12345', 'MixedCase'],
['123 \t 345', 'UPPER']]))
assert_array_equal(
self.A.rstrip(asbytes_nested(['5', 'ER'])),
asbytes_nested([[' abc ', ''], ['1234', 'MixedCase'],
['123 \t 345 \x00', 'UPP']]))
assert issubclass(self.B.rstrip().dtype.type, np.unicode_)
assert_array_equal(self.B.rstrip(),
[[u' \u03a3', ''], ['12345', 'MixedCase'],
['123 \t 345', 'UPPER']])
def test_strip(self):
assert_(issubclass(self.A.strip().dtype.type, np.string_))
assert_array_equal(
self.A.strip(),
asbytes_nested([['abc', ''], ['12345', 'MixedCase'],
['123 \t 345', 'UPPER']]))
assert_array_equal(
self.A.strip(asbytes_nested(['15', 'EReM'])),
asbytes_nested([[' abc ', ''], ['234', 'ixedCas'],
['23 \t 345 \x00', 'UPP']]))
assert_(issubclass(self.B.strip().dtype.type, np.unicode_))
assert_array_equal(self.B.strip(),
[[sixu('\u03a3'), ''], ['12345', 'MixedCase'],
['123 \t 345', 'UPPER']])
def test_rpartition(self):
if sys.version_info >= (2, 5):
P = self.A.rpartition(asbytes_nested(["3", "M"]))
assert issubclass(P.dtype.type, np.string_)
assert_array_equal(
P,
asbytes_nested(
[
[("", "", " abc "), ("", "", "")],
[("12", "3", "45"), ("", "M", "ixedCase")],
[("123 \t ", "3", "45 \0 "), ("", "", "UPPER")],
]
),
)
def test_replace(self):
R = self.A.replace(asbytes_nested(["3", "a"]), asbytes_nested(["##########", "@"]))
assert issubclass(R.dtype.type, np.string_)
assert_array_equal(
R,
asbytes_nested(
[[" abc ", ""], ["12##########45", "MixedC@se"], ["12########## \t ##########45 \x00", "UPPER"]]
),
)
if sys.version_info[0] < 3:
# NOTE: b'abc'.replace(b'a', 'b') is not allowed on Py3
R = self.A.replace(asbytes("a"), "\u03a3")
assert issubclass(R.dtype.type, np.unicode_)
assert_array_equal(R, [[" \u03a3bc ", ""], ["12345", "MixedC\u03a3se"], ["123 \t 345 \x00", "UPPER"]])
def test_array(self):
a = np.array([[1, 2], [3, 4]], float)
fmt = "%.18e"
c = StringIO()
np.savetxt(c, a, fmt=fmt)
c.seek(0)
assert_equal(
c.readlines(), asbytes_nested([(fmt + " " + fmt + "\n") % (1, 2), (fmt + " " + fmt + "\n") % (3, 4)])
)
a = np.array([[1, 2], [3, 4]], int)
c = StringIO()
np.savetxt(c, a, fmt="%d")
c.seek(0)
assert_equal(c.readlines(), asbytes_nested(["1 2\n", "3 4\n"]))
def test_rstrip(self):
assert issubclass(self.A.rstrip().dtype.type, np.string_)
assert_array_equal(self.A.rstrip(), asbytes_nested([
[' abc', ''],
['12345', 'MixedCase'],
['123 \t 345', 'UPPER']]))
assert_array_equal(self.A.rstrip(asbytes_nested(['5', 'ER'])),
asbytes_nested([
[' abc ', ''],
['1234', 'MixedCase'],
['123 \t 345 \x00', 'UPP']]))
assert issubclass(self.B.rstrip().dtype.type, np.unicode_)
assert_array_equal(self.B.rstrip(), [
[u' \u03a3', ''],
['12345', 'MixedCase'],
['123 \t 345', 'UPPER']])
def test_array(self):
a = np.array([[1, 2], [3, 4]], float)
fmt = "%.18e"
c = StringIO()
np.savetxt(c, a, fmt=fmt)
c.seek(0)
assert_equal(c.readlines(),
asbytes_nested(
[(fmt + ' ' + fmt + '\n') % (1, 2),
(fmt + ' ' + fmt + '\n') % (3, 4)]))
a = np.array([[1, 2], [3, 4]], int)
c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
assert_equal(c.readlines(), asbytes_nested(['1 2\n', '3 4\n']))
def test_usecols(self):
a = np.array([[1, 2], [3, 4]], float)
c = BytesIO()
np.savetxt(c, a)
c.seek(0)
x = textadapter.loadtxt(c, dtype=float, usecols=(1, ))
assert_array_equal(x, a[:, 1])
a = np.array([[1, 2, 3], [3, 4, 5]], float)
c = BytesIO()
np.savetxt(c, a)
c.seek(0)
x = textadapter.loadtxt(c, dtype=float, usecols=(1, 2))
assert_array_equal(x, a[:, 1:])
# Testing with arrays instead of tuples.
c.seek(0)
x = textadapter.loadtxt(c, dtype=float, usecols=np.array([1, 2]))
assert_array_equal(x, a[:, 1:])
# Checking with dtypes defined converters.
data = '''JOE 70.1 25.3\nBOB 60.5 27.9'''
c = StringIO(data)
names = ['stid', 'temp']
dtypes = ['S3', 'f8']
arr = textadapter.loadtxt(c,
usecols=(0, 2),
dtype=list(zip(names, dtypes)))
assert_equal(arr['stid'], asbytes_nested(["JOE", "BOB"]))
assert_equal(arr['temp'], [25.3, 27.9])
def test_usecols(self):
a = np.array([[1, 2], [3, 4]], float)
c = StringIO()
np.savetxt(c, a)
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=(1,))
assert_array_equal(x, a[:, 1])
a = np.array([[1, 2, 3], [3, 4, 5]], float)
c = StringIO()
np.savetxt(c, a)
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=(1, 2))
assert_array_equal(x, a[:, 1:])
# Testing with arrays instead of tuples.
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=np.array([1, 2]))
assert_array_equal(x, a[:, 1:])
# Checking with dtypes defined converters.
data = """JOE 70.1 25.3
BOB 60.5 27.9
"""
c = StringIO(data)
names = ["stid", "temp"]
dtypes = ["S4", "f8"]
arr = np.loadtxt(c, usecols=(0, 2), dtype=zip(names, dtypes))
assert_equal(arr["stid"], asbytes_nested(["JOE", "BOB"]))
assert_equal(arr["temp"], [25.3, 27.9])
def test_1D(self):
a = np.array([1, 2, 3, 4], int)
c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
lines = c.readlines()
assert_equal(lines, asbytes_nested(['1\n', '2\n', '3\n', '4\n']))
def test_split(self):
A = self.A.split(asbytes('3'))
assert_(issubclass(A.dtype.type, np.object_))
assert_equal(
A.tolist(),
asbytes_nested([[[' abc '], ['']], [['12', '45'], ['MixedCase']],
[['12', ' \t ', '45 \x00 '], ['UPPER']]]))
def test_replace(self):
R = self.A.replace(asbytes_nested(['3', 'a']),
asbytes_nested(['##########', '@']))
assert_(issubclass(R.dtype.type, np.string_))
assert_array_equal(
R,
asbytes_nested([[' abc ', ''], ['12##########45', 'MixedC@se'],
['12########## \t ##########45 \x00', 'UPPER']]))
if sys.version_info[0] < 3:
# NOTE: b'abc'.replace(b'a', 'b') is not allowed on Py3
R = self.A.replace(asbytes('a'), sixu('\u03a3'))
assert_(issubclass(R.dtype.type, np.unicode_))
assert_array_equal(R, [[sixu(' \u03a3bc '), ''],
['12345', sixu('MixedC\u03a3se')],
['123 \t 345 \x00', 'UPPER']])
def test_1D(self):
a = np.array([1, 2, 3, 4], int)
c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
lines = c.readlines()
assert_equal(lines, asbytes_nested(['1\n', '2\n', '3\n', '4\n']))
def test_from_object_array(self):
A = np.array([['abc', 2],
['long ', '0123456789']], dtype='O')
B = np.char.array(A)
assert_equal(B.dtype.itemsize, 10)
assert_array_equal(B, asbytes_nested([['abc', '2'],
['long', '0123456789']]))
def test_setslices_hardmask(self):
"Tests setting slices w/ hardmask."
base = self.base.copy()
mbase = base.view(mrecarray)
mbase.harden_mask()
try:
mbase[-2:] = (5, 5, 5)
assert_equal(mbase.a._data, [1, 2, 3, 5, 5])
assert_equal(mbase.b._data, [1.1, 2.2, 3.3, 5, 5.5])
assert_equal(mbase.c._data,
asbytes_nested(['one', 'two', 'three', '5', 'five']))
assert_equal(mbase.a._mask, [0, 1, 0, 0, 1])
assert_equal(mbase.b._mask, mbase.a._mask)
assert_equal(mbase.b._mask, mbase.c._mask)
except NotImplementedError:
# OK, not implemented yet...
pass
except AssertionError:
raise
else:
raise Exception("Flexible hard masks should be supported !")
# Not using a tuple should crash
try:
mbase[-2:] = 3
except (NotImplementedError, TypeError):
pass
else:
raise TypeError("Should have expected a readable buffer object!")
def test_1D(self):
a = np.array([1, 2, 3, 4], int)
c = StringIO()
np.savetxt(c, a, fmt="%d")
c.seek(0)
lines = c.readlines()
assert_equal(lines, asbytes_nested(["1\n", "2\n", "3\n", "4\n"]))
def test_array(self):
a = np.array([[1, 2], [3, 4]], float)
fmt = "%.18e"
c = StringIO()
np.savetxt(c, a, fmt=fmt)
c.seek(0)
assert_equal(
c.readlines(),
asbytes_nested([(fmt + ' ' + fmt + '\n') % (1, 2),
(fmt + ' ' + fmt + '\n') % (3, 4)]))
a = np.array([[1, 2], [3, 4]], int)
c = StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
assert_equal(c.readlines(), asbytes_nested(['1 2\n', '3 4\n']))
def test_arrays_replicated_3d(self):
s = idlsave.read(path.join(DATA_PATH,
'struct_arrays_replicated_3d.sav'),
verbose=False)
# Check column types
assert_true(s.arrays_rep.a.dtype.type is np.object_)
assert_true(s.arrays_rep.b.dtype.type is np.object_)
assert_true(s.arrays_rep.c.dtype.type is np.object_)
assert_true(s.arrays_rep.d.dtype.type is np.object_)
# Check column shapes
assert_equal(s.arrays_rep.a.shape, (4, 3, 2))
assert_equal(s.arrays_rep.b.shape, (4, 3, 2))
assert_equal(s.arrays_rep.c.shape, (4, 3, 2))
assert_equal(s.arrays_rep.d.shape, (4, 3, 2))
# Check values
for i in range(4):
for j in range(3):
for k in range(2):
assert_array_identical(s.arrays_rep.a[i, j, k],
np.array([1, 2, 3], dtype=np.int16))
assert_array_identical(
s.arrays_rep.b[i, j, k],
np.array([4., 5., 6., 7.], dtype=np.float32))
assert_array_identical(
s.arrays_rep.c[i, j, k],
np.array([np.complex64(1 + 2j),
np.complex64(7 + 8j)]))
assert_array_identical(
s.arrays_rep.d[i, j, k],
np.array(asbytes_nested(["cheese", "bacon", "spam"]),
dtype=np.object))
def test_strip(self):
assert_(issubclass(self.A.strip().dtype.type, np.string_))
assert_array_equal(self.A.strip(), asbytes_nested([
['abc', ''],
['12345', 'MixedCase'],
['123 \t 345', 'UPPER']]))
assert_array_equal(self.A.strip(asbytes_nested(['15', 'EReM'])),
asbytes_nested([
[' abc ', ''],
['234', 'ixedCas'],
['23 \t 345 \x00', 'UPP']]))
assert_(issubclass(self.B.strip().dtype.type, np.unicode_))
assert_array_equal(self.B.strip(), [
[sixu('\u03a3'), ''],
['12345', 'MixedCase'],
['123 \t 345', 'UPPER']])
def test_from_object_array(self):
A = np.array([['abc', 2],
['long ', '0123456789']], dtype='O')
B = np.char.array(A)
assert_equal(B.dtype.itemsize, 10)
assert_array_equal(B, asbytes_nested([['abc', '2'],
['long', '0123456789']]))
def test_split(self):
A = self.A.split(asbytes('3'))
assert_(issubclass(A.dtype.type, np.object_))
assert_equal(A.tolist(), asbytes_nested([
[[' abc '], ['']],
[['12', '45'], ['MixedCase']],
[['12', ' \t ', '45 \x00 '], ['UPPER']]]))
def test_setslices_hardmask(self):
# Tests setting slices w/ hardmask.
base = self.base.copy()
mbase = base.view(mrecarray)
mbase.harden_mask()
try:
mbase[-2:] = (5, 5, 5)
assert_equal(mbase.a._data, [1, 2, 3, 5, 5])
assert_equal(mbase.b._data, [1.1, 2.2, 3.3, 5, 5.5])
assert_equal(mbase.c._data,
asbytes_nested(['one', 'two', 'three', '5', 'five']))
assert_equal(mbase.a._mask, [0, 1, 0, 0, 1])
assert_equal(mbase.b._mask, mbase.a._mask)
assert_equal(mbase.b._mask, mbase.c._mask)
except NotImplementedError:
# OK, not implemented yet...
pass
except AssertionError:
raise
else:
raise Exception("Flexible hard masks should be supported !")
# Not using a tuple should crash
try:
mbase[-2:] = 3
except (NotImplementedError, TypeError):
pass
else:
raise TypeError("Should have expected a readable buffer object!")
def test_keep_missing_values(self):
"Check that we're not losing missing values"
converter = StringConverter(int,
default=0,
missing_values=asbytes("N/A"))
assert_equal(converter.missing_values, set(asbytes_nested(['',
'N/A'])))
def test_scalars(self):
s = readsav(path.join(DATA_PATH, 'struct_scalars.sav'), verbose=False)
assert_identical(s.scalars.a, np.array(np.int16(1)))
assert_identical(s.scalars.b, np.array(np.int32(2)))
assert_identical(s.scalars.c, np.array(np.float32(3.)))
assert_identical(s.scalars.d, np.array(np.float64(4.)))
assert_identical(s.scalars.e, np.array(asbytes_nested(["spam"]), dtype=np.object))
assert_identical(s.scalars.f, np.array(np.complex64(-1.+3j)))
def test_usecols_with_structured_dtype(self):
"Test usecols with an explicit structured dtype"
data = StringIO("""JOE 70.1 25.3\nBOB 60.5 27.9""")
names = ['stid', 'temp']
dtypes = ['S4', 'f8']
test = np.ndfromtxt(data, usecols=(0, 2), dtype=zip(names, dtypes))
assert_equal(test['stid'], asbytes_nested(["JOE", "BOB"]))
assert_equal(test['temp'], [25.3, 27.9])
def test_lapack(self):
f = FindDependenciesLdd()
deps = f.grep_dependencies(lapack_lite.__file__,
asbytes_nested(['libg2c', 'libgfortran']))
self.assertFalse(len(deps) > 1,
"""Both g77 and gfortran runtimes linked in lapack_lite ! This is likely to
cause random crashes and wrong results. See numpy INSTALL.txt for more
information.""")
def setup(self):
"Generic setup"
ilist = [1,2,3,4,5]
flist = [1.1,2.2,3.3,4.4,5.5]
slist = asbytes_nested(['one','two','three','four','five'])
ddtype = [('a',int),('b',float),('c','|S8')]
mask = [0,1,0,0,1]
self.base = ma.array(list(zip(ilist,flist,slist)),
mask=mask, dtype=ddtype)
def test_upper(self):
assert_(issubclass(self.A.upper().dtype.type, np.string_))
assert_array_equal(
self.A.upper(),
asbytes_nested([[' ABC ', ''], ['12345', 'MIXEDCASE'],
['123 \t 345 \0 ', 'UPPER']]))
assert_(issubclass(self.B.upper().dtype.type, np.unicode_))
assert_array_equal(self.B.upper(),
[[u' \u03a3 ', u''], [u'12345', u'MIXEDCASE'],
[u'123 \t 345 \0 ', u'UPPER']])
def test_capitalize(self):
assert_(issubclass(self.A.capitalize().dtype.type, np.string_))
assert_array_equal(
self.A.capitalize(),
asbytes_nested([[' abc ', ''], ['12345', 'Mixedcase'],
['123 \t 345 \0 ', 'Upper']]))
assert_(issubclass(self.B.capitalize().dtype.type, np.unicode_))
assert_array_equal(self.B.capitalize(),
[[sixu(' \u03c3 '), ''], ['12345', 'Mixedcase'],
['123 \t 345 \0 ', 'Upper']])
def test_swapcase(self):
assert_(issubclass(self.A.swapcase().dtype.type, np.string_))
assert_array_equal(
self.A.swapcase(),
asbytes_nested([[' ABC ', ''], ['12345', 'mIXEDcASE'],
['123 \t 345 \0 ', 'upper']]))
assert_(issubclass(self.B.swapcase().dtype.type, np.unicode_))
assert_array_equal(self.B.swapcase(),
[[u' \u03c3 ', u''], [u'12345', u'mIXEDcASE'],
[u'123 \t 345 \0 ', u'upper']])
def test_lower(self):
assert_(issubclass(self.A.lower().dtype.type, np.string_))
assert_array_equal(
self.A.lower(),
asbytes_nested([[' abc ', ''], ['12345', 'mixedcase'],
['123 \t 345 \0 ', 'upper']]))
assert_(issubclass(self.B.lower().dtype.type, np.unicode_))
assert_array_equal(self.B.lower(),
[[u' \u03c3 ', u''], [u'12345', u'mixedcase'],
[u'123 \t 345 \0 ', u'upper']])
def test_compressed(self):
s = readsav(path.join(DATA_PATH, 'various_compressed.sav'), verbose=False)
assert_identical(s.i8u, np.uint8(234))
assert_identical(s.f32, np.float32(-3.1234567e+37))
assert_identical(s.c64, np.complex128(1.1987253647623157e+112-5.1987258887729157e+307j))
assert_equal(s.array5d.shape, (4, 3, 4, 6, 5))
assert_identical(s.arrays.a[0], np.array([1, 2, 3], dtype=np.int16))
assert_identical(s.arrays.b[0], np.array([4., 5., 6., 7.], dtype=np.float32))
assert_identical(s.arrays.c[0], np.array([np.complex64(1+2j), np.complex64(7+8j)]))
assert_identical(s.arrays.d[0], np.array(asbytes_nested(["cheese", "bacon", "spam"]), dtype=np.object))
def test_title(self):
assert_(issubclass(self.A.title().dtype.type, np.string_))
assert_array_equal(
self.A.title(),
asbytes_nested([[' Abc ', ''], ['12345', 'Mixedcase'],
['123 \t 345 \0 ', 'Upper']]))
assert_(issubclass(self.B.title().dtype.type, np.unicode_))
assert_array_equal(self.B.title(),
[[u' \u03a3 ', u''], [u'12345', u'Mixedcase'],
[u'123 \t 345 \0 ', u'Upper']])
def test_header(self):
"Test retrieving a header"
data = StringIO('gender age weight\nM 64.0 75.0\nF 25.0 60.0')
test = np.ndfromtxt(data, dtype=None, names=True)
control = {'gender': np.array(asbytes_nested(['M', 'F'])),
'age': np.array([64.0, 25.0]),
'weight': np.array([75.0, 60.0])}
assert_equal(test['gender'], control['gender'])
assert_equal(test['age'], control['age'])
assert_equal(test['weight'], control['weight'])
def test_upper(self):
tgt = asbytes_nested([[' ABC ', ''], ['12345', 'MIXEDCASE'],
['123 \t 345 \0 ', 'UPPER']])
assert_(issubclass(self.A.upper().dtype.type, np.string_))
assert_array_equal(self.A.upper(), tgt)
tgt = [[sixu(' \u03a3 '), sixu('')],
[sixu('12345'), sixu('MIXEDCASE')],
[sixu('123 \t 345 \0 '), sixu('UPPER')]]
assert_(issubclass(self.B.upper().dtype.type, np.unicode_))
assert_array_equal(self.B.upper(), tgt)