def _extension_modules():
# NOTE: This assumes is_installed('numpy') has already passed.
# H/T to https://stackoverflow.com/a/41575848/1068170
from numpy.distutils import core
bezier_path = os.path.join(PACKAGE_ROOT, 'src', 'bezier')
extension = core.Extension(
name='bezier._speedup',
sources=[
os.path.join(bezier_path, '_speedup.pyf'),
os.path.join(bezier_path, 'speedup.f90'),
],
language='f90',
)
if 'config_fc' not in sys.argv:
sys.argv.extend(['config_fc', '--opt=-O3'])
return [extension]
'mahotas._histogram': ['mahotas/_histogram.cpp'],
'mahotas._interpolate':
['mahotas/_interpolate.cpp', 'mahotas/_filters.cpp'],
'mahotas._labeled': ['mahotas/_labeled.cpp', 'mahotas/_filters.cpp'],
'mahotas._morph': ['mahotas/_morph.cpp', 'mahotas/_filters.cpp'],
'mahotas._thin': ['mahotas/_thin.cpp'],
'mahotas.features._lbp': ['mahotas/features/_lbp.cpp'],
'mahotas.features._surf': ['mahotas/features/_surf.cpp'],
'mahotas.features._texture':
['mahotas/features/_texture.cpp', 'mahotas/_filters.cpp'],
'mahotas.features._zernike': ['mahotas/features/_zernike.cpp'],
}
ext_modules = [
numpyutils.Extension(key,
sources=sources,
undef_macros=undef_macros,
define_macros=define_macros)
for key, sources in extensions.items()
]
packages = setuptools.find_packages()
package_dir = {
'mahotas.tests': 'mahotas/tests',
'mahotas.demos': 'mahotas/demos',
}
package_data = {
'mahotas.tests': ['data/*'],
'mahotas.demos': ['data/*'],
}
compiler = numpy.distutils.ccompiler.get_default_compiler()
for arg in sys.argv:
if arg.startswith('--compiler'):
compiler = arg.split('=')[1]
if compiler in ['unix', 'mingw32', 'cygwin']:
extra_compile_args = []
# RNG: This seems to cause problems on some machines. To test for
# compatibility with VC++, uncomment this line.
#extra_compile_args = ['-std="iso9899:1990"', '-pedantic-errors']
else:
extra_compile_args = []
# Configure our C modules that are built with f2py.
tridiag = core.Extension(name='dadi.tridiag',
sources=['dadi/tridiag.pyf', 'dadi/tridiag.c'],
extra_compile_args=extra_compile_args)
int_c = core.Extension(name='dadi.integration_c',
sources=[
'dadi/integration_c.pyf', 'dadi/integration1D.c',
'dadi/integration2D.c', 'dadi/integration3D.c',
'dadi/integration_shared.c', 'dadi/tridiag.c'
],
extra_compile_args=extra_compile_args)
if '--cython' in sys.argv:
# Remove extra argument, so distutils doesn't complain
sys.argv.remove('--cython')
# Configure our C modules that are built with Cython.
# This needs to be done in a separate setup step from the remainder of dadi,
'mahotas._convolve': ['mahotas/_convolve.cpp', 'mahotas/_filters.cpp'],
'mahotas._distance': ['mahotas/_distance.cpp'],
'mahotas._histogram': ['mahotas/_histogram.cpp'],
'mahotas._interpolate': ['mahotas/_interpolate.cpp', 'mahotas/_filters.cpp'],
'mahotas._labeled': ['mahotas/_labeled.cpp', 'mahotas/_filters.cpp'],
'mahotas._morph': ['mahotas/_morph.cpp', 'mahotas/_filters.cpp'],
'mahotas._segmentation': ['mahotas/_segmentation.cpp'],
'mahotas._thin': ['mahotas/_thin.cpp'],
'mahotas.features._lbp': ['mahotas/features/_lbp.cpp'],
'mahotas.features._surf': ['mahotas/features/_surf.cpp'],
'mahotas.features._texture': ['mahotas/features/_texture.cpp', 'mahotas/_filters.cpp'],
'mahotas.features._zernike': ['mahotas/features/_zernike.cpp'],
}
ext_modules = [numpyutils.Extension(key, sources=sources, undef_macros=undef_macros, define_macros=define_macros) for key,sources in extensions.items()]
packages = setuptools.find_packages()
package_dir = {
'mahotas.tests': 'mahotas/tests',
'mahotas.demos': 'mahotas/demos',
}
package_data = {
'mahotas.tests': ['data/*'],
'mahotas.demos': ['data/*'],
}
classifiers = [
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
import setuptools
import numpy.distutils.core as core
daskr = core.Extension(name='SloppyCell._daskr',
sources=[
'SloppyCell/daskr.pyf', 'ddaskr/ddaskr.c',
'ddaskr/daux.c', 'ddaskr/dlinpk.c',
'ddaskr/ddaskr_types.h'
])
misc_c = core.Extension(
name='SloppyCell.misc_c',
sources=['SloppyCell/misc_c.c', 'SloppyCell/misc_c.pyf'])
# Collect files needed for dynamic compilation
rxn_data_files = [
'SloppyCell/ReactionNetworks/{0}'.format(_) for _ in [
'mtrand.c', 'mtrand.h', 'f2py_signatures.pyf',
'f2py_signatures_no_derivs.pyf'
]
]
# For reading a file into lon_description
import os
def read(fname):
return open(os.path.join(os.path.dirname(__file__), fname)).read()
core.setup(
name='SloppyCell',
version='1.1.0.dev1',
'imread/lib/_png.cpp',
'imread/lib/_tiff.cpp',
'imread/lib/_webp.cpp',
],
}
libraries = ['png', 'jpeg', 'tiff', 'webp']
if sys.platform.startswith('win'):
libraries.append('zlib')
ext_modules = [
numpyutils.Extension(
key,
libraries=libraries,
library_dirs=library_dirs,
include_dirs=include_dirs,
sources=sources,
undef_macros=undef_macros,
define_macros=define_macros,
) for key, sources in extensions.items()
]
packages = setuptools.find_packages()
package_dir = {
'imread.tests': 'imread/tests',
}
package_data = {
'imread.tests': ['data/*'],
}
import numpy.distutils
compiler = numpy.distutils.ccompiler.get_default_compiler()
for arg in sys.argv:
if arg.startswith('--compiler'):
compiler = arg.split('=')[1]
if compiler in ['unix', 'mingw32', 'cygwin']:
extra_compile_args = []
# RNG: This seems to cause problems on some machines. To test for
# compatibility with VC++, uncomment this line.
#extra_compile_args = ['-std="iso9899:1990"', '-pedantic-errors']
else:
extra_compile_args = []
# Configure our C modules that are built with f2py.
tridiag = core.Extension(name='dadi.tridiag',
sources=['dadi/tridiag.pyf', 'dadi/tridiag.c'],
extra_compile_args=extra_compile_args)
int_c = core.Extension(name='dadi.integration_c',
sources=[
'dadi/integration_c.pyf', 'dadi/integration1D.c',
'dadi/integration2D.c', 'dadi/integration3D.c',
'dadi/integration_shared.c', 'dadi/tridiag.c'
],
extra_compile_args=extra_compile_args)
# If we're building a distribution, try to update svnversion. Note that this
# fails silently.
if any(arg.count('dist') for arg in os.sys.argv):
os.system("svn up")
os.system("svn info > dadi/svnversion")