def _submit(self, method, response=None, raw=False):
"Constructs and submits the final SOAP message"
global GSX_SESSION
root = ET.SubElement(self.body, self.obj._namespace + method)
if method is "Authenticate":
root.append(self.data)
else:
request_name = method + "Request"
request = ET.SubElement(root, request_name)
request.append(GSX_SESSION)
if self._request == request_name:
# Some requests lack a top-level container
request.extend(self.data)
else:
request.append(self.data)
data = ET.tostring(self.env, "UTF-8")
res = self._send(method, data)
xml = res.read()
if res.status > 200:
raise GsxError(xml=xml, url=self._url)
logging.debug("Response: %s %s %s" % (res.status, res.reason, xml))
response = response or self._response
self.objects = objectify.parse(xml, response)
return self.objects
def _submit(self, method, response=None, raw=False):
"Constructs and submits the final SOAP message"
global GSX_SESSION
root = ET.SubElement(self.body, self.obj._namespace + method)
if method is "Authenticate":
root.append(self.data)
else:
request_name = method + "Request"
request = ET.SubElement(root, request_name)
request.append(GSX_SESSION)
if self._request == request_name:
# Some requests lack a top-level container
request.extend(self.data)
else:
request.append(self.data)
data = ET.tostring(self.env, "UTF-8")
res = self._send(method, data)
xml = res.read()
if res.status > 200:
raise GsxError(xml=xml, url=self._url)
logging.debug("Response: %s %s %s" % (res.status, res.reason, xml))
response = response or self._response
self.objects = objectify.parse(xml, response)
return self.objects
def _submit(self, method, response=None, raw=False):
"Constructs and submits the final SOAP message"
root = ET.SubElement(self.body, self.obj._namespace + method)
if method is "Authenticate":
root.append(self.data)
else:
request_name = method + "Request"
# @hack for Reported Symptom/Issue API which nests two ReportedSymptomIssueRequest elements
if method.endswith("Request"):
request_name = method
# @hack FetchDiagnosticDetails doesn't follow the naming conventions
if method.endswith('FetchDiagnosticDetails'):
request_name = 'FetchDiagnosticDetailsRequestData'
# @hack FetchDiagnosticSuites doesn't follow the naming conventions
if method.endswith('FetchDiagnosticSuites'):
request_name = 'FetchDiagnosticSuitesRequestData'
# @hack RunDiagnosticTest doesn't follow the naming conventions
if method.endswith('RunDiagnosticTest'):
request_name = 'RunDiagnosticTestRequestData'
request = ET.SubElement(root, request_name)
request.append(GSX_SESSION)
if self._request == request_name:
# Some requests lack a top-level container
request.extend(self.data)
else:
request.append(self.data)
data = ET.tostring(self.env, "UTF-8")
res = self._send(method, data)
xml = res.text.encode('utf-8')
self.xml_response = xml
logging.debug("Response: %s %s %s" %
(res.status_code, res.reason, xml))
if res.status_code > 200:
raise GsxError(xml=xml, url=self._url, status=res.status_code)
if raw is True:
return ET.fromstring(self.xml_response)
response = response or self._response
self.objects = objectify.parse(xml, response)
return self.objects
def _submit(self, method, response=None, raw=False):
"Constructs and submits the final SOAP message"
root = ET.SubElement(self.body, self.obj._namespace + method)
if method is "Authenticate":
root.append(self.data)
else:
request_name = method + "Request"
# @hack for Reported Symptom/Issue API which nests two ReportedSymptomIssueRequest elements
if method.endswith("Request"):
request_name = method
# @hack FetchDiagnosticDetails doesn't follow the naming conventions
if method.endswith('FetchDiagnosticDetails'):
request_name = 'FetchDiagnosticDetailsRequestData'
# @hack FetchDiagnosticSuites doesn't follow the naming conventions
if method.endswith('FetchDiagnosticSuites'):
request_name = 'FetchDiagnosticSuitesRequestData'
# @hack RunDiagnosticTest doesn't follow the naming conventions
if method.endswith('RunDiagnosticTest'):
request_name = 'RunDiagnosticTestRequestData'
request = ET.SubElement(root, request_name)
request.append(GSX_SESSION)
if self._request == request_name:
# Some requests lack a top-level container
request.extend(self.data)
else:
request.append(self.data)
data = ET.tostring(self.env, "UTF-8")
res = self._send(method, data)
xml = res.text.encode('utf-8')
self.xml_response = xml
logging.debug("Response: %s %s %s" % (res.status_code, res.reason, xml))
if res.status_code > 200:
raise GsxError(xml=xml, url=self._url, status=res.status_code)
if raw is True:
return ET.fromstring(self.xml_response)
response = response or self._response
self.objects = objectify.parse(xml, response)
return self.objects
def __init__(self, http_response, xml, el_method, el_response, raw=False):
self.result = None # result status
self.response = None # objectified result
self.el_method = el_method
self.el_response = el_response
if http_response.status_code > 200:
raise GsxError(xml=xml, url=self._url)
self.response = objectify.parse(xml, self.el_response)
logging.debug("Response: %s %s %s" % (http_response.status_code, http_response.reason, xml))
if raw is True:
return ET.fromstring(self.xml_response)
if hasattr(self.response, 'outCome'):
self.result = self.response.outCome
if self.result == 'STOP':
raise GsxError(message=self.response.messages, code=self.result)
def __init__(self, http_response, xml, el_method, el_response, raw=False):
self.result = None # result status
self.response = None # objectified result
self.el_method = el_method
self.el_response = el_response
if http_response.status_code > 200:
raise GsxError(xml=xml, url=self._url)
self.response = objectify.parse(xml, self.el_response)
logging.debug("Response: %s %s %s" %
(http_response.status_code, http_response.reason, xml))
if raw is True:
return ET.fromstring(self.xml_response)
if hasattr(self.response, 'outCome'):
self.result = self.response.outCome
if self.result == 'STOP':
raise GsxError(message=self.response.messages,
code=self.result)
def setParametersFromXML(self, params) -> dict:
"""
"""
import objectify
root = self.get_root()
if root.tag != 'project':
raise ValueError
for child in root:
kind = child.attrib
print(f'child tag is {child.tag}: {kind}')
print([elem.tag for elem in root.iter()])
systems = {}
for system in root.iter('system'):
attributes = system.attrib
name = dict(attributes['title'])
#name, status=attributes['title'], attributes['complete']
systems.update(name)
print(systems)
for description in root.iter('description'):
print(description.text)
for system in root.findall(
"./kind/interaction/system/[protein='CalB']"):
print(system.attrib)
project = objectify.parse(path_file)
return project