def load_mask_file(filename, lookup_table_filename=None):
# Load file
nip = nipy.load_image(filename)
occ = nipy_to_occiput(nip)
occ.set_mask_flag(1)
# Load the lookup table. If not specified, try to load from file with the same name as
# the mask image file.
if lookup_table_filename == None:
f = []
f.append(os.path.splitext(filename)[0]+'.lut')
f.append(os.path.splitext(os.path.splitext(filename)[0])[0]+'.lut') #This includes .nii.gz files
for lookup_table_filename in f:
try:
lut = load_freesurfer_lut_file(lookup_table_filename)
except:
lut = None
else:
lut = load_freesurfer_lut_file(lookup_table_filename)
if lut is not None:
occ.set_lookup_table(lut)
return occ
def import_mask(filename, lookup_table_filename=None):
# Load file
nip = nipy.load_image(filename)
occ = nipy_to_occiput(nip)
occ.set_mask_flag(1)
# Load the lookup table. If not specified, try to load from file with the same name as
# the mask image file.
if lookup_table_filename == None:
f = []
f.append(os.path.splitext(filename)[0]+'.lut')
f.append(os.path.splitext(os.path.splitext(filename)[0])[0]+'.lut') #This includes .nii.gz files
for lookup_table_filename in f:
try:
lut = load_freesurfer_lut_file(lookup_table_filename)
except:
lut = None
else:
lut = load_freesurfer_lut_file(lookup_table_filename)
if lut is not None:
occ.set_lookup_table(lut)
return occ
def load_image_file(filename):
nip = nipy.load_image(filename)
return nipy_to_occiput(nip)
def import_nifti(filename):
nip = nipy.load_image(filename)
return nipy_to_occiput(nip)
def import_nifti(filename):
nip = nipy.load_image(filename)
return nipy_to_occiput(nip)