def store(host, port, calling_ae_title, called_ae_title, filenames):
transfer_syntaxes = [
odil.registry.ExplicitVRLittleEndian,
odil.registry.ImplicitVRLittleEndian,
]
# Find all SOP classes to negotiate at association time. We don't need to
# read the whole data set for this
sop_classes = set()
for filename in filenames:
_, data_set = odil.read(
filename, halt_condition=lambda tag: tag>odil.registry.SOPClassUID)
sop_classes.update(data_set.as_string("SOPClassUID"))
print(sop_classes)
presentation_contexts = [
odil.AssociationParameters.PresentationContext(
2*i+1, sop_class, transfer_syntaxes, True, False)
for i, sop_class in enumerate(sop_classes)
]
# Create the association and the Store SCU
association = odil.Association()
association.set_peer_host(host)
association.set_peer_port(port)
association.update_parameters()\
.set_calling_ae_title(calling_ae_title)\
.set_called_ae_title(called_ae_title)\
.set_presentation_contexts(presentation_contexts)
association.associate()
negotiated_parameters = association.get_negotiated_parameters()
negotiated_pc = negotiated_parameters.get_presentation_contexts()
for pc in negotiated_pc:
print(pc.abstract_syntax, " ", pc.transfer_syntaxes[0])
store = odil.StoreSCU(association)
for filename in filenames:
_, data_set = odil.read(filename)
try:
store.set_affected_sop_class(data_set)
store.store(data_set)
except Exception as e:
print("Could not store {}: {}".format(filename, e))
association.release()
def test_respondDICOM(self):
wado = odil.webservices.WADORSResponse()
wado.set_data_sets(self.data_sets)
wado.respond_dicom(odil.webservices.Utils.Representation.DICOM)
self.assertEqual(wado.get_type(), odil.webservices.Utils.Type.DICOM)
self.assertEqual(wado.get_representation(),
odil.webservices.Utils.Representation.DICOM)
http = wado.get_http_response()
# Convert http response into string
http_str = ""
h = []
for header in http.get_headers():
h.append(header.key())
for header in h:
http_str += header + ": " + http.get_header(header)
http_str += "\r\n" + http.get_body()
msg = email.message_from_string(http_str)
self.assertTrue(msg.is_multipart())
i = 0
for part in msg.walk():
if part.get_content_type() == "application/dicom":
file = tempfile.mkstemp()
stream = io.FileIO(file[1], 'w')
stream.write(part.get_payload())
stream.close()
ds = odil.read(file[1])[1]
self.assertEqual(self.data_sets[i], ds)
i = i + 1
self.assertEqual(i, len(self.data_sets))
def convert(input, output, transfer_syntax, item_length, use_group_length):
header, data_set = odil.read(input)
to_remove = [
"FileMetaInformationVersion",
"MediaStorageSOPClassUID", "MediaStorageSOPInstanceUID",
"TransferSyntaxUID",
"ImplementationClassUID", "ImplementationVersionName"
]
for name in to_remove:
header.remove(getattr(odil.registry, name))
odil.write(data_set, output, header, transfer_syntax, item_length, use_group_length)
def print_(inputs, print_header, decode_uids):
for input in inputs:
logging.info("Printing {}".format(input))
header, data_set = odil.read(input)
max_length = find_max_name_length(data_set)
if print_header:
max_length = max(max_length, find_max_name_length(header))
if print_header:
print_data_set(header, decode_uids, "", max_length)
print()
print_data_set(data_set, decode_uids, "", max_length)
def convert(input, output, transfer_syntax, item_length, use_group_length):
header, data_set = odil.read(input)
to_remove = [
"FileMetaInformationVersion", "MediaStorageSOPClassUID",
"MediaStorageSOPInstanceUID", "TransferSyntaxUID",
"ImplementationClassUID", "ImplementationVersionName"
]
for name in to_remove:
header.remove(getattr(odil.registry, name))
odil.write(data_set, output, header, transfer_syntax, item_length,
use_group_length)
def print_(inputs, print_header, decode_uids):
for input in inputs:
logging.info("Printing {}".format(input))
header, data_set = odil.read(input)
max_length = find_max_name_length(data_set)
if print_header:
max_length = max(max_length, find_max_name_length(header))
if print_header:
print_data_set(header, decode_uids, "", max_length)
print()
print_data_set(data_set, decode_uids, "", max_length)
def main():
parser = argparse.ArgumentParser(description="Print content of DICOM file")
parser.add_argument("file")
parser.add_argument(
"--header", "-H", action="store_true", help="Print header")
parser.add_argument(
"--decode-uids", "-D", action="store_true", help="Display UID names")
arguments = parser.parse_args()
header, data_set = odil.read(arguments.file)
if arguments.header:
print_data_set(header, arguments.decode_uids)
print
print_data_set(data_set, arguments.decode_uids)
def run_client(self):
command = [
"findscu", "-P", "-k", "QueryRetrieveLevel=PATIENT", "-k",
"PatientID=*", "-k", "PatientName", "-q", "-X", "localhost",
"11113"
]
retcode = subprocess.call(command)
if retcode != 0:
return []
files = sorted(glob.glob("rsp*"))
data_sets = [odil.read(x)[1] for x in files]
for file_ in files:
os.remove(file_)
return data_sets
def run_client(self):
command = [
"getscu", "-ll", "error", "-P", "-k", "QueryRetrieveLevel=PATIENT",
"-k", "PatientID=*", "-k", "PatientName", "+B", "localhost",
"11113"
]
retcode = subprocess.call(command)
if retcode != 0:
return []
files = sorted(glob.glob("{}*".format(odil.uid_prefix)))
data_sets = [odil.read(x)[1] for x in files]
for file_ in files:
os.remove(file_)
return data_sets
def main():
parser = argparse.ArgumentParser(description="Print content of DICOM file")
parser.add_argument("file")
parser.add_argument("--header",
"-H",
action="store_true",
help="Print header")
parser.add_argument("--decode-uids",
"-D",
action="store_true",
help="Display UID names")
arguments = parser.parse_args()
header, data_set = odil.read(arguments.file)
if arguments.header:
print_data_set(header, arguments.decode_uids)
print
print_data_set(data_set, arguments.decode_uids)
def run_client(self):
command = [
"getscu",
"-ll", "error",
"-P", "-k", "QueryRetrieveLevel=PATIENT",
"-k", "PatientID=*", "-k", "PatientName",
"+B",
"localhost", "11113"]
retcode = subprocess.call(command)
if retcode != 0:
return []
files = sorted(glob.glob("{}*".format(odil.uid_prefix)))
data_sets = [odil.read(x)[1] for x in files]
for file_ in files:
os.remove(file_)
return data_sets
def as_json(input, output, pretty_print):
_, data_set = odil.read(input)
with open(output, "w") as fd:
json = odil.as_json(data_set, pretty_print)
fd.write(json)
def as_json(input, output, pretty_print):
_, data_set = odil.read(input)
with open(output, "w") as fd:
json = odil.as_json(data_set, pretty_print)
fd.write(json)
def as_binary(input, output, transfer_syntax):
_, data_set = odil.read(input)
odil.write(data_set, output, transfer_syntax=transfer_syntax)
def as_xml(input, output, pretty_print):
_, data_set = odil.read(input)
with open(output, "w") as fd:
xml = odil.as_xml(data_set, pretty_print)
fd.write(xml)
def as_xml(input, output, pretty_print):
_, data_set = odil.read(input)
with open(output, "w") as fd:
xml = odil.as_xml(data_set, pretty_print)
fd.write(xml)
def as_binary(input, output, transfer_syntax):
_, data_set = odil.read(input)
odil.write(data_set, output, transfer_syntax=transfer_syntax)