def test_add_code_list_item(self):
cli1 = ODM.CodeListItem(CodedValue="HGB", OrderNumber=1)
cli1.Alias.append(ODM.Alias(Context="nci:ExtCodeID", Name="C64848"))
self.cl.CodeListItem.append(cli1)
cli2 = ODM.CodeListItem(CodedValue="VITB12", OrderNumber=2)
cli2.Alias.append(ODM.Alias(Context="nci:ExtCodeID", Name="C64817"))
self.cl.CodeListItem.append(cli2)
cli3 = ODM.CodeListItem(CodedValue="GLUC", OrderNumber=3)
cli3.Alias = [ODM.Alias(Context="nci:ExtCodeID", Name="C41376")]
self.cl.CodeListItem.append(cli3)
cl_dict = self.cl.to_dict()
print(cl_dict)
self.assertDictEqual(cl_dict, self.expected_cli_dict())
def add_CL(self):
tt1 = ODM.TranslatedText(_content="No", lang="en")
dc1 = ODM.Decode()
dc1.TranslatedText = [tt1]
cli1 = ODM.CodeListItem(CodedValue="N")
cli1.Decode = dc1
tt2 = ODM.TranslatedText(_content="Yes", lang="en")
dc2 = ODM.Decode()
dc2.TranslatedText = [tt2]
cli2 = ODM.CodeListItem(CodedValue="Y")
cli2.Decode = dc2
cl = ODM.CodeList(OID="ODM.CL.NY_SUB_Y_N",
Name="No Yes Response",
DataType="text")
cl.CodeListItem = [cli1, cli2]
return [cl]
def test_to_xml_code_list_item(self):
attrs = self._set_attributes()
cl = ODM.CodeList(**attrs)
cli1 = ODM.CodeListItem(CodedValue="HGB", OrderNumber=1)
cli1.Alias = [ODM.Alias(Context="nci:ExtCodeID", Name="C64848")]
cl.CodeListItem.append(cli1)
cli2 = ODM.CodeListItem(CodedValue="VITB12", OrderNumber=2)
cli2.Alias.append(ODM.Alias(Context="nci:ExtCodeID", Name="C64817"))
cl.CodeListItem.append(cli2)
cli3 = ODM.CodeListItem(CodedValue="GLUC", OrderNumber=3)
cli3.Alias.append(ODM.Alias(Context="nci:ExtCodeID", Name="C41376"))
cl.CodeListItem.append(cli3)
cl_xml = cl.to_xml()
self.assertEqual(cl_xml.attrib["OID"], "ODM.CL.LBTESTCD")
ei = cl_xml.findall("CodeListItem")
self.assertEqual(ei[0].attrib["CodedValue"], "HGB")
def test_integer_type(self):
# order number is an integer - test as an integer
attrs = {"CodedValue": "HGB", "OrderNumber": 1}
cli = ODM.CodeListItem(**attrs)
self.assertEqual(cli.OrderNumber, 1)
# test integer as string
attrs = {"CodedValue": "HGB", "OrderNumber": "1"}
cli = ODM.CodeListItem(**attrs)
self.assertEqual(cli.OrderNumber, 1)
# test integer as float
attrs = {"CodedValue": "HGB", "OrderNumber": 1.1}
with self.assertRaises(TypeError):
cli = ODM.CodeListItem(**attrs)
# test non-integer as
attrs = {"CodedValue": "HGB", "OrderNumber": "a"}
with self.assertRaises(TypeError):
cli = ODM.CodeListItem(**attrs)
def test_CodeListItem(self):
cli = ODM.CodeListItem(CodedValue="HGB", OrderNumber="1")
tt1 = ODM.TranslatedText(_content="Hemoglobin", lang="en")
decode = ODM.Decode()
decode.TranslatedText.append(tt1)
cli.Decode = decode
cli.Alias.append(ODM.Alias(Context="nci:ExtCodeID", Name="C64848"))
cli_dict = cli.to_dict()
print(cli_dict)
is_valid = self.validator.verify_conformance(cli_dict, "CodeListItem")
self.assertTrue(is_valid)
def test_float_type(self):
# rank is a float - test as a float
attrs = {"CodedValue": "HGB", "Rank": 1.1}
cli = ODM.CodeListItem(**attrs)
self.assertEqual(cli.Rank, 1.1)
# test float as string
attrs = {"CodedValue": "HGB", "Rank": "1.1"}
cli = ODM.CodeListItem(**attrs)
self.assertEqual(cli.Rank, 1.1)
# test integer as float
attrs = {"CodedValue": "HGB", "Rank": 1}
cli = ODM.CodeListItem(**attrs)
self.assertEqual(cli.Rank, 1.0)
# test non-float as string
attrs = {"CodedValue": "HGB", "Rank": "a"}
with self.assertRaises(TypeError):
cli = ODM.CodeListItem(**attrs)
# test object as float
clr = ODM.CodeListRef(CodeListOID="CL.TEST")
attrs = {"CodedValue": "HGB", "Rank": clr}
with self.assertRaises(TypeError):
cli = ODM.CodeListItem(**attrs)