def testChgrpImage(self): """ Tests chgrp for a dummny image object (no Pixels) """ # One user in two groups client, exp = self.new_client_and_user() grp = self.new_group([exp]) gid = grp.id.val client.sf.getAdminService().getEventContext() # Reset session update = client.sf.getUpdateService() query = client.sf.getQueryService() admin = client.sf.getAdminService() first_gid = admin.getEventContext().groupId # Create a dataset in the 'first group' ds = omero.model.DatasetI() ds.name = rstring("testChgrpImage_target") ds = update.saveAndReturnObject(ds) ds_id = ds.id.val # Change our context to new group and create image admin.setDefaultGroup(exp, omero.model.ExperimenterGroupI(gid, False)) self.set_context(client, gid) update = client.sf.getUpdateService() # do we need to get this again? img = self.new_image() img = update.saveAndReturnObject(img) # Move image to new group chgrp = omero.cmd.Chgrp(type="/Image", id=img.id.val, options=None, grp=first_gid) # Link to Save link = omero.model.DatasetImageLinkI() link.child = omero.model.ImageI(img.id.val, False) link.parent = omero.model.DatasetI(ds_id, False) save = Save() save.obj = link requests = [chgrp, save] # we're going to chgrp THEN save DIlink # Change our context to original group... admin.setDefaultGroup(exp, omero.model.ExperimenterGroupI(first_gid, False)) self.set_context(client, first_gid) # We have to be in destination group for link Save to work self.doAllChgrp(requests, client) # ...check image img = client.sf.getQueryService().get("Image", img.id.val) self.assertEqual(img.details.group.id.val, first_gid) # check Dataset query = "select link from DatasetImageLink link where link.child.id=%s" % img.id.val l = client.sf.getQueryService().findByQuery(query, None) self.assertTrue(l is not None, "New DatasetImageLink on image not found") self.assertEqual(l.details.group.id.val, first_gid, "Link Created in same group as Image target")
def testChgrpImage(self): """ Tests chgrp for a dummny image object (no Pixels) """ # One user in two groups client, exp = self.new_client_and_user() grp = self.new_group([exp]) gid = grp.id.val client.sf.getAdminService().getEventContext() # Reset session update = client.sf.getUpdateService() query = client.sf.getQueryService() admin = client.sf.getAdminService() first_gid = admin.getEventContext().groupId # Create a dataset in the 'first group' ds = omero.model.DatasetI() ds.name = rstring("testChgrpImage_target") ds = update.saveAndReturnObject(ds) ds_id = ds.id.val # Change our context to new group and create image admin.setDefaultGroup(exp, omero.model.ExperimenterGroupI(gid, False)) self.set_context(client, gid) update = client.sf.getUpdateService() # do we need to get this again? img = self.new_image() img = update.saveAndReturnObject(img) # Move image to new group chgrp = omero.cmd.Chgrp(type="/Image", id=img.id.val, options=None, grp=first_gid) # Link to Save link = omero.model.DatasetImageLinkI() link.child = omero.model.ImageI(img.id.val, False) link.parent = omero.model.DatasetI(ds_id, False) save = Save() save.obj = link requests = [chgrp, save] # we're going to chgrp THEN save DIlink # Change our context to original group... admin.setDefaultGroup(exp, omero.model.ExperimenterGroupI(first_gid, False)) self.set_context(client, first_gid) # We have to be in destination group for link Save to work self.doAllSubmit(requests, client) # ...check image img = client.sf.getQueryService().get("Image", img.id.val) assert img.details.group.id.val == first_gid # check Dataset query = ( "select link from DatasetImageLink link\ where link.child.id=%s" % img.id.val ) l = client.sf.getQueryService().findByQuery(query, None) assert l is not None, "New DatasetImageLink on image not found" assert l.details.group.id.val == first_gid, "Link Created in same group as Image target"
def testChgrpImage(self): """ Tests chgrp for a dummny image object (no Pixels) """ # One user in two groups client, exp = self.new_client_and_user() grp = self.new_group([exp]) gid = grp.id.val client.sf.getAdminService().getEventContext() # Reset session update = client.sf.getUpdateService() query = client.sf.getQueryService() admin = client.sf.getAdminService() first_gid = admin.getEventContext().groupId # Create a dataset in the 'first group' ds = self.make_dataset(name="testChgrpImage_target", client=client) ds_id = ds.id.val # Change our context to new group and create image admin.setDefaultGroup(exp, ExperimenterGroupI(gid, False)) self.set_context(client, gid) update = client.sf.getUpdateService() # do we need to get this again? img = self.new_image() img = update.saveAndReturnObject(img) # Move image to new group chgrp = Chgrp2(targetObjects={'Image': [img.id.val]}, groupId=first_gid) # Link to Save link = DatasetImageLinkI() link.child = ImageI(img.id.val, False) link.parent = DatasetI(ds_id, False) save = Save() save.obj = link requests = [chgrp, save] # we're going to chgrp THEN save DIlink # Change our context to original group... admin.setDefaultGroup(exp, ExperimenterGroupI(first_gid, False)) self.set_context(client, first_gid) # We have to be in destination group for link Save to work self.doSubmit(requests, client) # ...check image img = client.sf.getQueryService().get("Image", img.id.val) assert img.details.group.id.val == first_gid # check Dataset query = "select link from DatasetImageLink link\ where link.child.id=%s" % img.id.val l = client.sf.getQueryService().findByQuery(query, None) assert l is not None, "New DatasetImageLink on image not found" assert l.details.group.id.val == first_gid,\ "Link Created in same group as Image target"
def testChgrpDatasetToTargetProject(self, credentials): """ Tests that an Admin can move a user's Dataset to a private group and link it to an existing user's Project there. Also tests that the user can do the same chgrp themselves. """ # One user in two groups client, user = self.new_client_and_user(perms=PRIVATE) target_grp = self.new_group([user], perms=PRIVATE) eCtx = client.sf.getAdminService().getEventContext() # Reset session userId = eCtx.userId target_gid = target_grp.id.val # User creates Dataset in current group... update = client.sf.getUpdateService() ds = self.make_dataset(client=client) # ...and Project in target group ctx = {'omero.group': str(target_gid)} pr = self.new_project() pr = update.saveAndReturnObject(pr, ctx) requests = [] saves = [] chgrp = Chgrp2( targetObjects={"Dataset": [ds.id.val]}, groupId=target_gid) requests.append(chgrp) link = ProjectDatasetLinkI() link.details.owner = ExperimenterI(userId, False) link.child = DatasetI(ds.id.val, False) link.parent = ProjectI(pr.id.val, False) save = Save() save.obj = link saves.append(save) requests.extend(saves) if credentials == "user": c = client else: c = self.root self.doSubmit(requests, c, omero_group=target_gid) queryService = client.sf.getQueryService() ctx = {'omero.group': '-1'} # query across groups dataset = queryService.get('Dataset', ds.id.val, ctx) ds_gid = dataset.details.group.id.val assert target_gid == ds_gid,\ "Dataset should be in group: %s, NOT %s" % (target_gid, ds_gid)
def testChgrpDatasetToTargetProject(self, credentials): """ Tests that an Admin can move a user's Dataset to a private group and link it to an existing user's Project there. Also tests that the user can do the same chgrp themselves. """ # One user in two groups client, user = self.new_client_and_user(perms=PRIVATE) target_grp = self.new_group([user], perms=PRIVATE) eCtx = client.sf.getAdminService().getEventContext() # Reset session userId = eCtx.userId target_gid = target_grp.id.val # User creates Dataset in current group... update = client.sf.getUpdateService() ds = self.make_dataset(client=client) # ...and Project in target group ctx = {'omero.group': str(target_gid)} pr = self.new_project() pr = update.saveAndReturnObject(pr, ctx) requests = [] saves = [] chgrp = Chgrp2(targetObjects={"Dataset": [ds.id.val]}, groupId=target_gid) requests.append(chgrp) link = ProjectDatasetLinkI() link.details.owner = ExperimenterI(userId, False) link.child = DatasetI(ds.id.val, False) link.parent = ProjectI(pr.id.val, False) save = Save() save.obj = link saves.append(save) requests.extend(saves) if credentials == "user": c = client else: c = self.root self.doSubmit(requests, c, omero_group=target_gid) queryService = client.sf.getQueryService() ctx = {'omero.group': '-1'} # query across groups dataset = queryService.get('Dataset', ds.id.val, ctx) ds_gid = dataset.details.group.id.val assert target_gid == ds_gid,\ "Dataset should be in group: %s, NOT %s" % (target_gid, ds_gid)
def chgrpImagesToTargetDataset(self, imgCount): """ Helper method to test chgrp of image(s) to target Dataset """ # One user in two groups client, user = self.new_client_and_user(perms=PRIVATE) admin = client.sf.getAdminService() target_grp = self.new_group([user], perms=PRIVATE) target_gid = target_grp.id.val images = self.importMIF(imgCount, client=client) ds = self.createDSInGroup(target_gid, client=client) # each chgrp includes a 'save' link to target dataset saves = [] ids = [] for i in images: ids.append(i.id.val) link = DatasetImageLinkI() link.child = ImageI(i.id.val, False) link.parent = DatasetI(ds.id.val, False) save = Save() save.obj = link saves.append(save) chgrp = Chgrp2( targetObjects={"Image": ids}, groupId=target_gid) requests = [chgrp] requests.extend(saves) self.doSubmit(requests, client, omero_group=target_gid) # Check Images moved to correct group queryService = client.sf.getQueryService() ctx = {'omero.group': '-1'} # query across groups for i in images: image = queryService.get('Image', i.id.val, ctx) img_gid = image.details.group.id.val assert target_gid == img_gid,\ "Image should be in group: %s, NOT %s" % (target_gid, img_gid) # Check Dataset has images linked dsImgs = client.sf.getContainerService().getImages( 'Dataset', [ds.id.val], None, ctx) assert len(dsImgs) == len(images),\ "All Images should be in target Dataset" previous_gid = admin.getEventContext().groupId return (ds, images, client, user, previous_gid, target_gid)
def chgrpImagesToTargetDataset(self, imgCount): """ Helper method to test chgrp of image(s) to target Dataset """ # One user in two groups client, user = self.new_client_and_user(perms=PRIVATE) admin = client.sf.getAdminService() target_grp = self.new_group([user], perms=PRIVATE) target_gid = target_grp.id.val images = self.importMIF(imgCount, client=client) ds = self.createDSInGroup(target_gid, client=client) # each chgrp includes a 'save' link to target dataset saves = [] ids = [] for i in images: ids.append(i.id.val) link = DatasetImageLinkI() link.child = ImageI(i.id.val, False) link.parent = DatasetI(ds.id.val, False) save = Save() save.obj = link saves.append(save) chgrp = Chgrp2(targetObjects={"Image": ids}, groupId=target_gid) requests = [chgrp] requests.extend(saves) self.doSubmit(requests, client, omero_group=target_gid) # Check Images moved to correct group queryService = client.sf.getQueryService() ctx = {'omero.group': '-1'} # query across groups for i in images: image = queryService.get('Image', i.id.val, ctx) img_gid = image.details.group.id.val assert target_gid == img_gid,\ "Image should be in group: %s, NOT %s" % (target_gid, img_gid) # Check Dataset has images linked dsImgs = client.sf.getContainerService().getImages( 'Dataset', [ds.id.val], None, ctx) assert len(dsImgs) == len(images),\ "All Images should be in target Dataset" previous_gid = admin.getEventContext().groupId return (ds, images, client, user, previous_gid, target_gid)