def main(conn, argv):
parser = argparse.ArgumentParser()
parser.add_argument("image", help="Image ID")
args = parser.parse_args(argv)
image_id = args.image
data = swc.read(
"20200628-ftp/RL_35_guassian_4_4_80.tif_x94_y327_z241_app2_(GSBT).swc"
).data_block
# img_name = 'FADU_tumour_Lectin_substack_deconvolved_RL_35iters_guassian_psf_4_4_80.tif'
image = conn.getObject("Image", image_id)
# delete existing ROIs
roi_service = conn.getRoiService()
result = roi_service.findByImage(image.id, None)
roi_ids = [roi.id.val for roi in result.rois]
if roi_ids:
print("Deleting ROIs...")
conn.deleteObjects("Roi", roi_ids, wait=True)
size_y = image.getSizeY()
paths = parse_swc(data, size_y)
red_int = int.from_bytes([255, 0, 0, 255], byteorder="big", signed=True)
for count, path in enumerate(paths):
points = []
for zyx in path:
z, y, x = zyx
point = PointI()
point.x = rdouble(x)
point.y = rdouble(y)
point.theZ = rint(round(z))
point.strokeColor = rint(red_int)
points.append(point)
print(f"{count}/{len(paths)} Creating ROI with {len(points)} points")
create_roi(image, points)
