def eid2path(eid: Union[str, Iter], one=None, offline: bool = False) -> Union[Path, List]:
"""
Returns a local path from an eid, regardless of whether the path exists locally
:param eid: An experiment uuid
:param one: An instance of ONE
:param offline: If True, do not connect to database (not implemented)
:return: a Path instance
Examples:
>>> base = 'https://test.alyx.internationalbrainlab.org'
>>> one = ONE(username='******', password='******', base_url=base)
Connected to...
>>> eid = '4e0b3320-47b7-416e-b842-c34dc9004cf8'
>>> eid2path(eid, one=one)
WindowsPath('E:/FlatIron/zadorlab/Subjects/flowers/2018-07-13/001')
>>> eid2path([eid, '7dc3c44b-225f-4083-be3d-07b8562885f4'], one=one)
[WindowsPath('E:/FlatIron/zadorlab/Subjects/flowers/2018-07-13/001'),
WindowsPath('E:/FlatIron/cortexlab/Subjects/KS005/2019-04-11/001')]
"""
if not one:
one = ONE()
if offline:
raise NotImplementedError
# path = one.path_from_eid(eid, offline=True)
else:
d = one.get_details(eid)
path = d.get('local_path')
if not path:
root = Path(one._get_cache_dir(None)) / d['lab'] / 'Subjects'
path = root / d['subject'] / d['start_time'][:10] / ('%03d' % d['number'])
return path
def ref2path(ref: Union[str, Mapping, Iter], one=None, offline: bool = False) -> Union[Path, List]:
"""
Convert one or more experiment references to session path(s)
:param ref: One or more objects with keys ('subject', 'date', 'sequence'), or strings with the
form yyyy-mm-dd_n_subject
:param one: An instance of ONE
:param offline: Return path without connecting to database (unimplemented)
:return: a Path object for the experiment session
Examples:
>>> base = 'https://test.alyx.internationalbrainlab.org'
>>> one = ONE(username='******', password='******', base_url=base)
Connected to...
>>> ref = {'subject': 'flowers', 'date': datetime(2018, 7, 13).date(), 'sequence': 1}
>>> ref2path(ref, one=one)
WindowsPath('E:/FlatIron/zadorlab/Subjects/flowers/2018-07-13/001')
>>> ref2path(['2018-07-13_1_flowers', '2019-04-11_1_KS005'], one=one)
[WindowsPath('E:/FlatIron/zadorlab/Subjects/flowers/2018-07-13/001'),
WindowsPath('E:/FlatIron/cortexlab/Subjects/KS005/2019-04-11/001')]
"""
if not one:
one = ONE()
if offline:
raise NotImplementedError # Requires lab name :(
# root = Path(one._get_cache_dir(None))
# path = root / ref.subject / str(ref.date) / ('%03d' % ref.sequence)
else:
ref = ref2dict(ref, parse=False)
eid, (d,) = one.search(
subjects=ref['subject'],
date_range=(str(ref['date']), str(ref['date'])),
number=ref['sequence'],
details=True)
path = d.get('local_path')
if not path:
root = Path(one._get_cache_dir(None)) / 'Subjects' / d['lab']
return root / d['subject'] / d['start_time'][:10] / ('%03d' % d['number'])
else:
return Path(path)
