def go_ontology():
return load_ontology.load(GO_ONT_CONFIG_ID)[0]
def unit_ontology():
return load_ontology.load(UNIT_OG_ID)[0]
from onto_lib_py3 import load_ontology as lo
ONT_NAME_TO_ONT_ID = {"EFO_CL_DOID_UBERON_CVCL": "17", "UO": "7"}
ONT_ID_TO_OG = {x: lo.load(x)[0] for x in ONT_NAME_TO_ONT_ID.values()}
def the_ontology():
return ONT_ID_TO_OG['17']
def unit_ontology():
return ONT_ID_TO_OG['7']
if source_term is None or target_term is None:
continue
edge_type = edge_info['edge_type']
inv_edge_type = "inv_%s" % edge_type
if edge_type in source_term.relationships:
source_term.relationships[edge_type].append(target_id)
else:
source_term.relationships[edge_type] = [target_id]
if inv_edge_type in target_term.relationships:
target_term.relationships[inv_edge_type].append(source_id)
else:
target_term.relationships[inv_edge_type] = [source_id]
return og
ONT_NAME_TO_ONT_ID = {"EFO_CL_DOID_UBERON_CVCL":"17"}
ONT_ID_TO_OG = {x: patch_the_ontology(load_ontology.load(x)[0]) for x in ONT_NAME_TO_ONT_ID.values()}
def the_ontology():
return ONT_ID_TO_OG['17']
def unit_ontology():
return load_ontology.load(UNIT_OG_ID)[0]
def go_ontology():
return load_ontology.load(GO_ONT_CONFIG_ID)[0]
def main():
#og = the_ontology()
#og = patch_the_ontology(og)
#print og.id_to_term['CL:0000081']
edge_type = edge_info['edge_type']
inv_edge_type = "inv_%s" % edge_type
if edge_type in source_term.relationships:
source_term.relationships[edge_type].append(target_id)
else:
source_term.relationships[edge_type] = [target_id]
if inv_edge_type in target_term.relationships:
target_term.relationships[inv_edge_type].append(source_id)
else:
target_term.relationships[inv_edge_type] = [source_id]
return og
ONT_NAME_TO_ONT_ID = {"EFO_CL_DOID_UBERON_CVCL": "17"}
ONT_ID_TO_OG = {
x: patch_the_ontology(load_ontology.load(x)[0])
for x in ONT_NAME_TO_ONT_ID.values()
}
def the_ontology():
return ONT_ID_TO_OG['17']
def unit_ontology():
return load_ontology.load(UNIT_OG_ID)[0]
def go_ontology():
return load_ontology.load(GO_ONT_CONFIG_ID)[0]