def get(self, request, *args, **kwargs):
"""
Retrieves prescription entry records from database for display
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
logger.info('Retrieving prescription id from request URI')
prescription = self.model.objects.get(pk=kwargs.get('id'))
prescription_entries = PrescriptionEntry.objects.filter(
prescription=prescription,
is_deleted=False).order_by('medicine__order')
log_end_time()
return render(
request, self.template_name, {
'prescription':
prescription,
'prescription_entries':
prescription_entries,
'max_column_width':
-12,
'max_cell_width':
-6,
'edit_link':
reverse_lazy(PRESCRIPTION_EDIT_PAGE_NAME,
kwargs={'id': prescription.id})
})
def initialise_form(view, request):
"""
Function for instantiating GeneralSearchForm
:param view: View instance
:param request: HttpRequest instance
:return: GeneralSearchForm instance
"""
log_start_time()
if request.POST:
logger.info('Received a POST request')
data = request.POST
elif request.GET:
logger.info('Received a GET request')
data = request.GET
else:
logger.info('Did not receive a GET or a POST request')
return None
log_end_time()
return GeneralSearchForm(data=data,
placeholder='Search ' + view.page_title,
form_action=view.search_link,
act_search_type_label_var_name='act_search_type_label',
search_key_values_var_name='search_type_labels')
def initialise_form(view, request):
"""
Function for instantiating GeneralSearchForm
:param view: View instance
:param request: HttpRequest instance
:return: GeneralSearchForm instance
"""
log_start_time()
if request.POST:
logger.info('Received a POST request')
data = request.POST
elif request.GET:
logger.info('Received a GET request')
data = request.GET
else:
logger.info('Did not receive a GET or a POST request')
return None
log_end_time()
return GeneralSearchForm(
data=data,
placeholder='Search ' + view.page_title,
form_action=view.search_link,
act_search_type_label_var_name='act_search_type_label',
search_key_values_var_name='search_type_labels')
def __init__(self, diagnosis_category, *args, **kwargs):
"""
Initialises form helper depending on the level of DiagnosisCategory model instance.
:param diagnosis_category: DiagnosisCategory model instance
:param args: variable arguments
:param kwargs: named arguments
"""
super(DiagnosisCategoryFormHelper, self).__init__(*args, **kwargs)
log_start_time()
logger.info('Creating form helper for [%s] with level [%s]' % (diagnosis_category, diagnosis_category.level))
self.form_class = 'form-horizontal'
self.label_class = 'inline_form_label col-xs-offset-%s col-xs-%s' % (
diagnosis_category.level, self.MAX_BOOTSTRAP_COLUMN_WIDTH - int(diagnosis_category.level))
self.field_class = 'col-xs-6'
self.form_tag = False
self.layout = Layout(
'diagnosis_category',
'value',
'remark',
)
self.render_required_fields = True
log_end_time()
def create_link(page_name, arg_value_pair):
"""
Function for creating a link using a page name. Query string will be appended if provided
:param page_name: valid and registered page name
:param arg_value_pair: key-value pair inside a dictionary
:return: created link in string
"""
log_start_time()
link = ''
try:
logger.info('Creating link for [%s]' % page_name)
if page_name:
link = reverse_lazy(page_name)
logger.info('Created link is [%s]' % link)
else:
logger.info('Received empty value for page_name')
if arg_value_pair and isinstance(arg_value_pair, dict):
logger.info('Creating query string using arg_value_pair')
link += '?%s' % urllib.parse.urlencode(arg_value_pair)
else:
logger.info('No value for arg_value_pair found')
except NoReverseMatch:
logger.warn('Cannot create link for [%s]' % page_name)
link = ''
logger.info('Full link created [%s]' % link)
log_end_time()
return link
def create_link(page_name, arg_value_pair):
"""
Function for creating a link using a page name. Query string will be appended if provided
:param page_name: valid and registered page name
:param arg_value_pair: key-value pair inside a dictionary
:return: created link in string
"""
log_start_time()
link = ''
try:
logger.info('Creating link for [%s]' % page_name)
if page_name:
link = reverse_lazy(page_name)
logger.info('Created link is [%s]' % link)
else:
logger.info('Received empty value for page_name')
if arg_value_pair and isinstance(arg_value_pair, dict):
logger.info('Creating query string using arg_value_pair')
link += '?%s' % urllib.parse.urlencode(arg_value_pair)
else:
logger.info('No value for arg_value_pair found')
except NoReverseMatch:
logger.warn('Cannot create link for [%s]' % page_name)
link = ''
logger.info('Full link created [%s]' % link)
log_end_time()
return link
def process_search(self, request):
"""
Receives either POST or GET request then proceeds to search records depending on search query
:param request: HttpRequest instance
:return: HttpResponse instance
"""
log_start_time()
form = initialise_form(self, request)
if form is not None and form.is_valid():
logger.info('Received a valid form')
self.search_type = form.cleaned_data['search_type']
self.search_param = form.cleaned_data['search_param']
logger.info('Creating search link using page name [%s]' % self.list_page_name)
self.search_link = create_link(self.list_page_name,
{'search_param': self.search_param, 'search_type': self.search_type})
if self.search_param:
logger.info('Received a non-empty search parameter')
results = search_matches(self, self.search_type, self.search_param)
else:
logger.info('Did not receive a valid search parameter')
results = self.model.objects.all().order_by('-id')
paginator = Paginator(results, MAX_LIST_ITEMS_PER_PAGE)
logger.info('Calling common functions for listing records')
select_search_results(self, request, paginator)
modify_page_links(self, paginator)
validate_response(self)
response = render(request, self.template_name,
{'form': form,
'search_link': self.search_link,
'searches': self.searches,
'search_type_labels': self.search_labels,
'act_search_type_label': self.search_labels.get(self.search_type),
'pages': self.pages,
'page_title': self.page_title,
'page_icon': self.page_icon,
'current_page': self.current_page,
'error_message': self.error_message,
'next_link': self.next_link,
'next_link_class': self.next_link_class,
'previous_link': self.previous_link,
'previous_link_class': self.previous_link_class,
})
else:
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def modify_page_links(view, paginator):
"""
Function for setting links and classes for paginator buttons in list view.
:param view: View instance
:param paginator: Paginator instance
:return: None
"""
log_start_time()
search_link = view.search_link + PAGE_PARAMETER_SUFFIX
if int(view.current_page) < int(paginator.num_pages):
logger.info(
'Paginator number of pages is greater than current page value')
view.next_link = search_link + str(view.current_page + 1)
view.next_link_class = ''
else:
logger.info(
'Paginator number of pages is less than current page value')
view.next_link = None
view.next_link_class = DISABLED_LINK_CLASS
if int(paginator.num_pages) < MAX_PAGINATE_NUMBER:
logger.info('Limiting links to number of paginator pages')
end_page = paginator.num_pages
start_page = 1
elif int(view.current_page) > MAX_PAGINATE_NUMBER:
logger.info('Changing lower limit for paginator links')
end_page = view.current_page
start_page = view.current_page - MAX_PAGINATE_NUMBER + 1
else:
logger.info(
'Number of paginator pages is greater than default number of search pages'
)
end_page = MAX_PAGINATE_NUMBER
start_page = 1
if view.current_page <= 1:
logger.info('Current page is the lower limit for paginator links')
view.previous_link = None
view.previous_link_class = DISABLED_LINK_CLASS
else:
logger.info(
'Changing previous link button class to show previous batch of results'
)
view.previous_link = search_link + str(view.current_page - 1)
view.previous_link_class = ''
view.pages = list(range(start_page, end_page + 1))
log_end_time()
def get(self, request, *args, **kwargs):
"""
Creates a formset for creating medication entry records for a specified patient. Value for [patient] is taken
from request URI. If a medication ID is provided in URI, retrieves medication entries from database for update
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
logger.info('Retrieving patient ID from request URI')
patient_id = request.GET.get('patient')
logger.info('Retrieving medication record ID from request URI')
medication_id = kwargs.get('id')
if patient_id:
logger.info('Retrieved patient ID value [%s]' % patient_id)
patient = Patient.objects.get(pk=int(patient_id))
logger.info('Creating formset with 1 extra form')
MedicationFormSet = formset_factory(self.form_class)
formset = MedicationFormSet()
response = render(request, self.template_name,
{'formset': formset, 'patient': patient, 'submit_label': 'Record'})
elif medication_id:
logger.info('Retrieved medication record ID value [%s]' % medication_id)
medication = Medication.objects.get(pk=medication_id)
logger.info('Retrieving medication entries using medication record ID [%s]' % medication.id)
medication_entries = MedicationEntry.objects.filter(medication=medication)
initial = []
logger.info('Pre-filling formset using medication entry records retrieved from database')
for entry in medication_entries:
initial.append({'description': entry.description, 'dosage': entry.dosage, 'package': entry.package,
'frequency': entry.frequency, 'designated_time': entry.designated_time})
logger.info('Creating formset with no additional forms')
MedicationFormSet = formset_factory(self.form_class, extra=0)
formset = MedicationFormSet(initial=initial)
response = render(request, self.template_name,
{'formset': formset, 'patient': medication.patient, 'submit_label': 'Record'})
else:
logger.warn('Did not receive value for required medical parameter')
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Packages page icons and page labels for links available in the dashboard page
:param request: HttpRequest instance
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse instance
"""
log_start_time()
icons_labels_zip = zip(PAGE_ICONS, PAGE_LABELS)
# will default to searching Patient
if request.GET.get('search_category'):
search_category = request.GET.get('search_category')
else:
search_category = DEFAULT_SEARCH_CATEGORY
if search_category == DEFAULT_SEARCH_CATEGORY:
search_type_labels = PATIENT_SEARCH_TYPE_LABEL
else:
search_type_labels = GENERAL_SEARCH_TYPE_LABEL
log_end_time()
return render(
request, self.template_name, {
'form':
GeneralSearchForm(
placeholder='Search ' +
PAGE_LABELS[int(search_category) - LIST_OFFSET],
form_action=SEARCH_VIEW_LINKS.get(search_category),
act_search_type_label_var_name='act_search_type_label',
search_key_values_var_name='search_type_labels'),
'act_search_type_label':
search_type_labels.get(DEFAULT_SEARCH_TYPE),
'icons_labels_zip':
icons_labels_zip,
'view_link':
self.view_link,
'search_category':
int(search_category),
'search_type_labels':
search_type_labels,
'add_link':
reverse_lazy(PATIENT_FORM_PAGE_NAME),
'search_category_param':
'?search_category='
})
def validate_response(view):
"""
Function that performs all validation on view instance and sets error messages accordingly
:param view: View instance
:return: None
"""
log_start_time()
if view.search_count < 1:
logger.info('Search returned an emtpy list')
view.error_message = EMPTY_SEARCH_RESULT
else:
logger.info('Records found for received search category and search parameter')
log_end_time()
def validate_response(view):
"""
Function that performs all validation on view instance and sets error messages accordingly
:param view: View instance
:return: None
"""
log_start_time()
if view.search_count < 1:
logger.info('Search returned an emtpy list')
view.error_message = EMPTY_SEARCH_RESULT
else:
logger.info(
'Records found for received search category and search parameter')
log_end_time()
def modify_page_links(view, paginator):
"""
Function for setting links and classes for paginator buttons in list view.
:param view: View instance
:param paginator: Paginator instance
:return: None
"""
log_start_time()
search_link = view.search_link + PAGE_PARAMETER_SUFFIX
if int(view.current_page) < int(paginator.num_pages):
logger.info('Paginator number of pages is greater than current page value')
view.next_link = search_link + str(view.current_page + 1)
view.next_link_class = ''
else:
logger.info('Paginator number of pages is less than current page value')
view.next_link = None
view.next_link_class = DISABLED_LINK_CLASS
if int(paginator.num_pages) < MAX_PAGINATE_NUMBER:
logger.info('Limiting links to number of paginator pages')
end_page = paginator.num_pages
start_page = 1
elif int(view.current_page) > MAX_PAGINATE_NUMBER:
logger.info('Changing lower limit for paginator links')
end_page = view.current_page
start_page = view.current_page - MAX_PAGINATE_NUMBER + 1
else:
logger.info('Number of paginator pages is greater than default number of search pages')
end_page = MAX_PAGINATE_NUMBER
start_page = 1
if view.current_page <= 1:
logger.info('Current page is the lower limit for paginator links')
view.previous_link = None
view.previous_link_class = DISABLED_LINK_CLASS
else:
logger.info('Changing previous link button class to show previous batch of results')
view.previous_link = search_link + str(view.current_page - 1)
view.previous_link_class = ''
view.pages = list(range(start_page, end_page + 1))
log_end_time()
def search_matches(view, search_type, search_param):
"""
Function for retrieving records based on model type and search parameters.
:param view:
:param search_type:
:param search_param:
:return:
"""
log_start_time()
query_set = None
if view.model == Patient:
search_query = {
'1': view.model.objects.filter(last_name__icontains=search_param).order_by('first_name'),
'2': view.model.objects.filter(first_name__icontains=search_param).order_by('last_name'),
'3': view.model.objects.filter(birth_date__icontains=search_param).order_by('last_name'),
}
elif view.model == MedicalRecord:
search_query = {
'1': view.model.objects.filter(patient__last_name__icontains=search_param).order_by('-recorded_date'),
'2': view.model.objects.filter(recorded_by__last_name__icontains=search_param).order_by(
'-recorded_date'),
'3': view.model.objects.filter(recorded_date__icontains=search_param).order_by('-recorded_date')
}
else:
search_query = {
'1': view.model.objects.filter(medical_record__patient__last_name__icontains=search_param).order_by(
'-recorded_date'),
'2': view.model.objects.filter(recorded_by__last_name__icontains=search_param).order_by(
'-recorded_date'),
'3': view.model.objects.filter(recorded_date__icontains=search_param).order_by('-recorded_date')
}
try:
logger.info('Retrieving record for model [%s] with search type [%s] and search parameter [%s]' % (
view.model, search_type, search_param))
query_set = search_query.get(search_type)
view.search_count = query_set.count()
except KeyError:
logger.warn('Received invalid search type and search parameter')
view.error_message = INVALID_SEARCH_TYPE
return query_set
def extract_form_data(initial_formset):
"""
Returns an array of initial data from formset argument
:param initial_formset: Dict of formset
:return: Array of initial formset data
"""
log_start_time()
initial = []
for form in initial_formset:
data = {}
for field in form.fields:
data[field] = form[field].value()
initial.append(data)
log_end_time()
return initial
def __init__(self, *args, **kwargs):
super(MedicationFormHelper, self).__init__(*args, **kwargs)
log_start_time()
self.form_class = 'form-horizontal'
self.form_tag = False
self.layout = Layout(
Div(Div('description', css_class='col-xs-3'),
Div('dosage', css_class='col-xs-offset-0-2-5 col-xs-1'),
Div('package', css_class='col-xs-offset-0-2-5 col-xs-1'),
Div('frequency', css_class='col-xs-offset-0-2-5 col-xs-2'),
Div('designated_time',
css_class='col-xs-offset-0-2-5 col-xs-2'),
Div('DELETE', css_class='col-xs-offset-0-2-5 col-xs-1'),
css_class='form-group row'), )
self.render_required_fields = True
log_end_time()
def __init__(self, *args, **kwargs):
super(MedicationFormHelper, self).__init__(*args, **kwargs)
log_start_time()
self.form_class = 'form-horizontal'
self.form_tag = False
self.layout = Layout(
Div(
Div('description', css_class='col-xs-3'),
Div('dosage', css_class='col-xs-offset-0-2-5 col-xs-1'),
Div('package', css_class='col-xs-offset-0-2-5 col-xs-1'),
Div('frequency', css_class='col-xs-offset-0-2-5 col-xs-2'),
Div('designated_time', css_class='col-xs-offset-0-2-5 col-xs-2'),
Div('DELETE', css_class='col-xs-offset-0-2-5 col-xs-1'),
css_class='form-group row'
),
)
self.render_required_fields = True
log_end_time()
def select_search_results(view, request, paginator):
"""
Function for retrieving value of [page] parameter in URI.
:param view: View instance
:param request: HttpRequest instance
:param paginator: Paginator instance
:return: None
"""
log_start_time()
if request.POST:
logger.info('Defaulting to first page because of POST request')
view.current_page = 1
view.searches = paginator.page(1)
elif request.GET.get('page'):
logger.info('Retrieved value for page parameter')
page = request.GET.get('page')
try:
logger.info('Retrieving results based on retrieved page value')
view.searches = paginator.page(page)
view.current_page = int(page)
except PageNotAnInteger:
logger.warn(
'Provided value for page parameter cannot be converted to int')
view.error_message = INVALID_SEARCH_PARAMETER_VALUE
view.searches = paginator.page(1)
except EmptyPage:
logger.warn(
'Provided value for page parameter is out of bounds for paginator'
)
view.error_message = INVALID_SEARCH_PARAMETER_VALUE
view.searches = paginator.page(paginator.num_pages)
else:
logger.info('Did not receive page parameter')
view.current_page = 1
view.searches = paginator.page(1)
log_end_time()
def __init__(self, *args, **kwargs):
super(PrescriptionEntryFormHelper, self).__init__(*args, **kwargs)
log_start_time()
self.form_class = 'form-horizontal'
self.form_tag = False
self.layout = Layout(
Div(Div(Div(Div('prescribe', css_class='col-xs-1'),
Div('medicine_label', css_class='col-xs-10'),
css_class='row'),
css_class='container col-xs-3'),
Div('dosage', css_class='col-xs-1'),
Div('package', css_class='col-xs-offset-1 col-xs-1'),
Div('frequency', css_class='col-xs-offset-1 col-xs-2'),
Div('designated_time', css_class='col-xs-offset-1 col-xs-2'),
css_class='form-group row'),
'medicine',
)
self.render_required_fields = True
log_end_time()
def get(self, request, *args, **kwargs):
"""
Retrieves prescription entry records from database for display
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
logger.info('Retrieving medication id from request URI')
medication = self.model.objects.get(pk=kwargs.get('id'))
medication_entries = MedicationEntry.objects.filter(medication=medication)
log_end_time()
return render(request, self.template_name,
{'medication': medication, 'medication_entries': medication_entries,
'max_column_width': -12,
'max_cell_width': -6, 'edit_link': reverse_lazy(MEDICATION_EDIT_PAGE_NAME,
kwargs={'id': medication.id})})
def get(self, request, *args, **kwargs):
"""
Packages page icons and page labels for links available in the dashboard page
:param request: HttpRequest instance
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse instance
"""
log_start_time()
icons_labels_zip = zip(PAGE_ICONS, PAGE_LABELS)
# will default to searching Patient
if request.GET.get('search_category'):
search_category = request.GET.get('search_category')
else:
search_category = DEFAULT_SEARCH_CATEGORY
if search_category == DEFAULT_SEARCH_CATEGORY:
search_type_labels = PATIENT_SEARCH_TYPE_LABEL
else:
search_type_labels = GENERAL_SEARCH_TYPE_LABEL
log_end_time()
return render(request, self.template_name,
{'form': GeneralSearchForm(
placeholder='Search ' + PAGE_LABELS[int(search_category) - LIST_OFFSET],
form_action=SEARCH_VIEW_LINKS.get(search_category),
act_search_type_label_var_name='act_search_type_label',
search_key_values_var_name='search_type_labels'),
'act_search_type_label': search_type_labels.get(DEFAULT_SEARCH_TYPE),
'icons_labels_zip': icons_labels_zip, 'view_link': self.view_link,
'search_category': int(search_category),
'search_type_labels': search_type_labels,
'add_link': reverse_lazy(PATIENT_FORM_PAGE_NAME),
'search_category_param': '?search_category='})
def select_search_results(view, request, paginator):
"""
Function for retrieving value of [page] parameter in URI.
:param view: View instance
:param request: HttpRequest instance
:param paginator: Paginator instance
:return: None
"""
log_start_time()
if request.POST:
logger.info('Defaulting to first page because of POST request')
view.current_page = 1
view.searches = paginator.page(1)
elif request.GET.get('page'):
logger.info('Retrieved value for page parameter')
page = request.GET.get('page')
try:
logger.info('Retrieving results based on retrieved page value')
view.searches = paginator.page(page)
view.current_page = int(page)
except PageNotAnInteger:
logger.warn('Provided value for page parameter cannot be converted to int')
view.error_message = INVALID_SEARCH_PARAMETER_VALUE
view.searches = paginator.page(1)
except EmptyPage:
logger.warn('Provided value for page parameter is out of bounds for paginator')
view.error_message = INVALID_SEARCH_PARAMETER_VALUE
view.searches = paginator.page(paginator.num_pages)
else:
logger.info('Did not receive page parameter')
view.current_page = 1
view.searches = paginator.page(1)
log_end_time()
def get(self, request, *args, **kwargs):
"""
Retrieves diagnosis category records from database then creates a formset depending on the
number of retrieved rows. Pre-fills patient field using relationship between retrieved value of
[medical] argument from URI
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
initial = []
logger.info('Retrieving diagnosis categories for form creation')
diagnosis_categories = DiagnosisCategory.objects.all()
logger.info('Retrieving medical record ID from request URI')
medical_record_id = request.GET.get('medical')
logger.info('Retrieving diagnosis record ID from request URI')
diagnosis_id = kwargs.get('id')
if medical_record_id:
logger.info('Retrieved medical record ID value [%s]' %
medical_record_id)
medical_record = MedicalRecord.objects.get(pk=medical_record_id)
logger.info(
'Creating initial diagnosis_category and value for each form in formset'
)
for category in diagnosis_categories:
initial.append({
'diagnosis_category': category,
'value': '',
})
formset = self.DiagnosisFormSet(initial=initial)
response = render(
request, self.template_name, {
'formset': formset,
'medical_record': medical_record,
'submit_label': 'Record'
})
elif diagnosis_id:
logger.info('Retrieved diagnosis record ID value [%s]' %
diagnosis_id)
diagnosis = Diagnosis.objects.get(pk=diagnosis_id)
for category in diagnosis_categories:
diagnosis_entry = DiagnosisEntry.objects.filter(
diagnosis=diagnosis, diagnosis_category=category)
if diagnosis_entry.count() > 1:
logger.warn(
'Diagnosis entry count is greater than expected for category [%s]'
% category)
logger.info('Defaulting to first retrieved item')
initial.append({
'diagnosis_category':
diagnosis_entry.first().diagnosis_category,
'value':
diagnosis_entry.first().value,
'remark':
diagnosis_entry.first().remark
if diagnosis_entry.first().remark else ''
})
elif diagnosis_entry.count() < 1:
logger.info(
'No related diagnosis entry for category [%s]' %
category)
initial.append({
'diagnosis_category': category,
'value': '',
})
else:
logger.info(
'Successful diagnosis entry retrieval for category [%s]'
% category)
initial.append({
'diagnosis_category':
diagnosis_entry.last().diagnosis_category,
'value':
diagnosis_entry.last().value,
'remark':
diagnosis_entry.last().remark
if diagnosis_entry.last().remark else ''
})
formset = self.DiagnosisFormSet(initial=initial)
response = render(
request, self.template_name, {
'formset': formset,
'medical_record': diagnosis.medical_record,
'submit_label': 'Update',
'diagnosis': diagnosis
})
else:
logger.warn('Did not receive value for required medical parameter')
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves diagnosis category records from database. These categories will be used to fetch records for
patient's diagnosis record. Categories will be used to group and order diagnosis entry records within a zip
list.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
category_list = []
diagnosis_entry_per_category_list = []
logger.info('Retrieving diagnosis id from request URI')
diagnosis = self.model.objects.get(pk=kwargs.get('id'))
diagnosis_categories = DiagnosisCategory.objects.all().order_by(
'order')
for category in diagnosis_categories:
logger.info(
'Retrieving diagnosis entry records for category [%s]' %
category)
category_list.append(category)
diagnosis_entry = DiagnosisEntry.objects.filter(
diagnosis=diagnosis, diagnosis_category=category)
if diagnosis_entry.count() > 1:
logger.warn(
'Diagnosis entry count is greater than expected for category [%s]'
% category)
logger.info('Defaulting to first retrieved item')
diagnosis_entry_per_category_list.append(
diagnosis_entry.first())
elif diagnosis_entry.count() < 1:
logger.info('No related diagnosis entry for category [%s]' %
category)
diagnosis_entry_per_category_list.append(None)
else:
logger.info(
'Successful diagnosis entry retrieval for category [%s]' %
category)
diagnosis_entry_per_category_list.append(
diagnosis_entry.last())
category_entry_zip = zip(category_list,
diagnosis_entry_per_category_list)
log_end_time()
return render(
request, self.template_name, {
'diagnosis':
diagnosis,
'category_entry_zip':
category_entry_zip,
'max_column_width':
-12,
'max_cell_width':
-6,
'edit_link':
reverse_lazy(DIAGNOSIS_EDIT_PAGE_NAME,
kwargs={'id': diagnosis.id})
})
def post(self, request, *args, **kwargs):
"""
Validates formset data. Creates a new diagnosis record then saves diagnosis entry records with non-empty value.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
if 'cancel' in request.POST:
logger.info('User clicked cancel')
return HttpResponseRedirect(reverse_lazy(DASHBOARD_PAGE_NAME))
else:
logger.info('User clicked submit')
logger.info('Retrieving POST data')
formset = self.DiagnosisFormSet(request.POST)
diagnosis_id = request.POST.get('diagnosis')
medical_record = MedicalRecord.objects.get(
pk=int(request.POST.get('medical_record')))
logger.info('Validating formset values')
if formset.is_valid():
logger.info('Received valid formset data')
if diagnosis_id:
logger.info(
'Retrieved diagnosis record as foreign key for diagnosis entry records'
)
diagnosis = Diagnosis.objects.get(pk=diagnosis_id)
else:
logger.info(
'Created diagnosis record as foreign key for diagnosis entry records'
)
diagnosis = Diagnosis(medical_record=medical_record,
recorded_by=request.user,
recorded_date=localtime(now()))
with atomic():
log_enter_atomic_trans()
for idx, form in enumerate(formset):
if diagnosis_id:
logger.info(
'Retrieving latest diagnosis entry for diagnosis record [%s] and diagnosis category [%s]'
% (diagnosis_id, form.instance.diagnosis_category))
diagnosis_entry = DiagnosisEntry.objects.filter(
diagnosis=diagnosis,
diagnosis_category=form.instance.diagnosis_category
).order_by('-id').first()
else:
logger.info(
'Creating latest diagnosis entry for diagnosis record [%s] and diagnosis category [%s]'
% (diagnosis_id, form.instance.diagnosis_category))
diagnosis_entry = form.save(commit=False)
if diagnosis_entry and diagnosis_entry.value:
if diagnosis_id:
logger.info('Updating details of diagnosis entry')
diagnosis_entry.value = form.instance.value
diagnosis_entry.remark = form.instance.remark
else:
logger.info(
'Saving details of new diagnosis entry')
diagnosis.save()
diagnosis_entry.diagnosis = diagnosis
diagnosis_entry.recorded_by = request.user
diagnosis_entry.recorded_date = localtime(now())
diagnosis_entry.save()
else:
logger.info('Value for [%s] is empty')
log_exit_atomic_trans()
logger.info('Redirecting to diagnosis profile page')
response = redirect(diagnosis)
else:
logger.warn('Received invalid formset data')
response = render(request, self.template_name, {
'formset': formset,
'medical_record': medical_record
})
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves laboratory test detail records from database then creates a formset depending on the
number of retrieved rows. Pre-fills patient field using relationship between retrieved value of
[medical] argument from URI
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
initial = []
logger.info('Retrieving medical record ID from request URI')
medical_record_id = request.GET.get('medical')
logger.info('Retrieving laboratory record ID from request URI')
laboratory_id = kwargs.get('id')
laboratory_test_details = LaboratoryTestDetail.objects.all()
if medical_record_id:
logger.info('Retrieved medical record ID value [%s]' %
medical_record_id)
medical_record = MedicalRecord.objects.get(
pk=int(medical_record_id))
for test_detail in laboratory_test_details:
logger.info('Creating display labels for [%s]' % test_detail)
display = '%s: %s' % (str(
test_detail.laboratory_test), test_detail.description)
if test_detail.laboratory_measurement_unit.is_displayable:
display += ' (%s)' % test_detail.laboratory_measurement_unit
logger.info('Created display is [%s]' % display)
initial.append({
'laboratory_test_detail_display': display,
'laboratory_test_detail': test_detail,
'value': ''
})
formset = self.LaboratoryFormSet(initial=initial)
response = render(
request, self.template_name, {
'formset': formset,
'medical_record': medical_record,
'submit_label': 'Record'
})
elif laboratory_id:
logger.info('Retrieved laboratory record ID value [%s]' %
laboratory_id)
laboratory = Laboratory.objects.get(pk=int(laboratory_id))
for test_detail in laboratory_test_details:
logger.info(
'Retrieving non-deleted laboratory results for laboratory record [%s] and test detail [%s]'
% (laboratory_id, test_detail))
laboratory_result = LaboratoryResult.objects.filter(
laboratory=laboratory,
laboratory_test_detail=test_detail,
is_deleted=False)
logger.info('Creating display labels for [%s]' % test_detail)
display = '%s: %s' % (str(
test_detail.laboratory_test), test_detail.description)
if test_detail.laboratory_measurement_unit.is_displayable:
display += ' (%s)' % test_detail.laboratory_measurement_unit
logger.info('Created display is [%s]' % display)
if laboratory_result.count() > 1:
logger.warn(
'Laboratory result count is greater than expected for test detail [%s]'
% test_detail)
logger.info('Defaulting to first retrieved item')
initial.append({
'laboratory_test_detail_display':
display,
'laboratory_test_detail':
laboratory_result.first().laboratory_test_detail,
'value':
laboratory_result.first().value,
})
elif laboratory_result.count() < 1:
logger.info(
'No related laboratory result record for test detail [%s]'
% test_detail)
initial.append({
'laboratory_test_detail_display': display,
'laboratory_test_detail': test_detail,
'value': '',
})
else:
logger.info(
'Successful laboratory result retrieval for test detail [%s]'
% test_detail)
initial.append({
'laboratory_test_detail_display':
display,
'laboratory_test_detail':
laboratory_result.last().laboratory_test_detail,
'value':
laboratory_result.last().value,
})
formset = self.LaboratoryFormSet(initial=initial)
response = render(
request, self.template_name, {
'formset': formset,
'medical_record': laboratory.medical_record,
'submit_label': 'Update',
'laboratory': laboratory
})
else:
logger.warn('Did not receive value for required patient parameter')
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def post(self, request, *args, **kwargs):
"""
Validates formset data. Creates a new laboratory record then saves laboratory result records with
non-empty value.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
logger.info('Retrieving laboratory record ID from POST data')
laboratory_id = request.POST.get('laboratory')
logger.info(
'Retrieving medical record from database using medical record ID from POST data'
)
medical_record = MedicalRecord.objects.get(
pk=int(request.POST.get('medical_record')))
if 'cancel' in request.POST:
logger.info('User clicked cancel')
if medical_record:
logger.info('Redirecting to medical record page')
return HttpResponseRedirect(
reverse_lazy(MEDICAL_RECORD_PROFILE_PAGE_NAME,
kwargs={'id': medical_record.id}))
else:
logger.info('Redirecting to home page')
return HttpResponseRedirect(reverse_lazy(DASHBOARD_PAGE_NAME))
else:
logger.info('User clicked submit')
logger.info('Retrieving POST data')
formset = self.LaboratoryFormSet(request.POST)
logger.info('Validating formset values')
if formset.is_valid():
logger.info('Received valid formset data')
if laboratory_id:
logger.info(
'Retrieved laboratory record as foreign key for laboratory result records'
)
laboratory = Laboratory.objects.get(pk=int(laboratory_id))
else:
logger.info(
'Created laboratory record as foreign key for laboratory result records'
)
laboratory = Laboratory(medical_record=medical_record,
recorded_by=request.user,
recorded_date=localtime(now()))
with atomic():
log_enter_atomic_trans()
for form in formset:
if laboratory_id:
logger.info(
'Retrieving latest laboratory result for laboratory record [%s] and test detail [%s]'
% (laboratory_id,
form.instance.laboratory_test_detail))
laboratory_result = LaboratoryResult.objects.filter(
laboratory=laboratory,
laboratory_test_detail=form.instance.
laboratory_test_detail,
is_deleted=False).order_by('-id').first()
else:
logger.info(
'Creating latest laboratory result for laboratory record [%s] and test detail [%s]'
% (laboratory_id,
form.instance.laboratory_test_detail))
laboratory_result = form.save(commit=False)
if laboratory_result:
logger.info(
'Received a non-empty instance for laboratory result'
)
if laboratory_id and form.instance.value:
if form.instance.value == laboratory_result.value:
logger.info('No change was detected')
else:
logger.info(
'Updating details of laboratory laboratory'
)
laboratory_result.value = form.instance.value
elif laboratory_id and not form.instance.value:
logger.info(
'Removing details of laboratory result')
laboratory_result.is_deleted = True
elif laboratory_result.value:
logger.info(
'Saving details of new laboratory result for new laboratory record'
)
laboratory.save()
laboratory_result.laboratory = laboratory
else:
logger.info('Skipping laboratory result for [%s]' %
form.instance.laboratory_test_detail)
continue
else:
logger.info(
'No value for laboratory_result variable. Using value from form'
)
if form.instance.value:
logger.info(
'Saving details of new laboratory result for previous laboratory record'
)
laboratory.save()
laboratory_result = form.save(commit=False)
laboratory_result.laboratory = laboratory
else:
logger.info('Skipping laboratory result for [%s]' %
form.instance.laboratory_test_detail)
continue
laboratory_result.updated_by = request.user
laboratory_result.updated_date = localtime(now())
laboratory_result.save()
log_exit_atomic_trans()
logger.info('Redirecting to laboratory profile page')
response = redirect(laboratory)
else:
logger.warn('Received invalid formset data')
response = render(request, self.template_name, {
'formset': formset,
'medical_record': medical_record
})
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves medicine records from database then creates a formset depending on the number of retrieved rows. Pre-
fills patient field using relationship between retrieved value of [medical] argument from URI
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
initial = []
logger.info('Retrieving medicine records for form creation')
medicines = Medicine.objects.all()
logger.info('Retrieving medical record ID from request URI')
medical_record_id = request.GET.get('medical')
logger.info('Retrieving prescription record ID from request URI')
prescription_id = kwargs.get('id')
if medical_record_id:
logger.info('Retrieved medical record ID value [%s]' %
medical_record_id)
medical_record = MedicalRecord.objects.get(pk=medical_record_id)
logger.info(
'Creating initial medicine and medicine_label for each form in formset'
)
for medicine in medicines:
initial.append({
'medicine': medicine,
'medicine_label': medicine
})
formset = self.PrescriptionFormSet(initial=initial)
response = render(
request, self.template_name, {
'formset': formset,
'medical_record': medical_record,
'submit_label': 'Record'
})
elif prescription_id:
logger.info('Retrieved prescription record ID value [%s]' %
prescription_id)
prescription = Prescription.objects.get(pk=prescription_id)
logger.info('Creating')
for medicine in medicines:
prescription_entry = PrescriptionEntry.objects.filter(
prescription=prescription,
medicine=medicine,
is_deleted=False)
if prescription_entry.count() > 1:
logger.warn(
'Prescription entry count is greater than expected for medicine [%s]'
% medicine)
logger.info('Defaulting to first retrieved item')
initial.append({
'medicine':
prescription_entry.first().medicine,
'medicine_label':
prescription_entry.first().medicine,
'dosage':
prescription_entry.first().dosage,
'package':
prescription_entry.first().package,
'frequency':
prescription_entry.first().frequency,
'designated_time':
prescription_entry.first().designated_time,
'prescribe':
True,
})
elif prescription_entry.count() < 1:
logger.info(
'No related prescription entry for medicine [%s]' %
medicine)
initial.append({
'medicine': medicine,
'medicine_label': medicine,
})
else:
logger.info(
'Successful prescription entry retrieval for medicine [%s]'
% medicine)
initial.append({
'medicine':
prescription_entry.last().medicine,
'medicine_label':
prescription_entry.last().medicine,
'dosage':
prescription_entry.last().dosage,
'package':
prescription_entry.last().package,
'frequency':
prescription_entry.last().frequency,
'designated_time':
prescription_entry.last().designated_time,
'prescribe':
True,
})
formset = self.PrescriptionFormSet(initial=initial)
response = render(
request, self.template_name, {
'formset': formset,
'medical_record': prescription.medical_record,
'submit_label': 'Update',
'prescription': prescription
})
else:
logger.warn('Did not receive value for required medical parameter')
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves records from database using value of [medical] argument from URI. Uses a default list
page template.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
context = {}
logger.info('Retrieving medical record id from request URI')
patient_id = request.GET.get('patient')
medical_record_id = request.GET.get('medical')
if medical_record_id:
medical_record = MedicalRecord.objects.get(pk=request.GET.get('medical'))
patient = medical_record.patient
logger.info('Retrieving records using medical record id value [%s]' % medical_record.id)
result_list = self.model.objects.filter(medical_record=medical_record).order_by('-recorded_date')
self.search_link = create_link(self.list_page_name, {'medical': medical_record.id})
context.update({'left_link': create_link(self.left_link_page_name, {'medical': medical_record.id}),
'left_link_icon': self.left_link_icon,
'left_link_name': self.left_link_name,
'center_link': medical_record.get_absolute_url(),
'center_link_icon': MEDICAL_RECORD_PAGE_ICON,
'center_link_name': 'Medical Record',
'right_link': create_link(self.right_link_page_name, {'medical': medical_record.id}),
'right_link_icon': self.right_link_icon,
'right_link_name': self.right_link_name,
'add_link': create_link(self.add_page_name, {'medical': medical_record.id}),
})
elif patient_id:
patient = Patient.objects.get(pk=request.GET.get('patient'))
logger.info('Retrieving records using patient id value [%s]' % patient.id)
result_list = self.model.objects.filter(patient=patient).order_by('-recorded_date')
self.search_link = create_link(self.list_page_name, {'patient': patient.id})
context.update({'add_link': create_link(self.add_page_name, {'patient': patient.id}), })
else:
logger.warn('Did not receive value for required medical parameter')
return redirect(DASHBOARD_PAGE_NAME, permanent=True)
paginator = Paginator(result_list, MAX_LIST_ITEMS_PER_PAGE)
self.search_count = result_list.count()
logger.info('Calling common functions for listing results')
select_search_results(self, request, paginator)
modify_page_links(self, paginator)
validate_response(self)
context.update({'searches': self.searches,
'patient': patient,
'pages': self.pages,
'search_link': self.search_link,
'error_message': self.error_message,
'page_title': self.page_title,
'page_icon': self.page_icon,
'current_page': self.current_page,
'next_link': self.next_link,
'next_link_class': self.next_link_class,
'previous_link': self.previous_link,
'previous_link_class': self.previous_link_class, })
log_end_time()
return render(request, self.template_name, context)
def post(self, request, *args, **kwargs):
"""
Validates formset data. Creates a new prescription record then saves prescription entry records with
prescribe value set to True.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
if 'cancel' in request.POST:
logger.info('User clicked cancel')
return HttpResponseRedirect(reverse_lazy(DASHBOARD_PAGE_NAME))
else:
logger.info('User clicked submit')
logger.info('Retrieving POST data')
formset = self.PrescriptionFormSet(request.POST)
prescription_id = request.POST.get('prescription')
medical_record = MedicalRecord.objects.get(
pk=int(request.POST.get('medical_record')))
logger.info('Validating formset values')
if formset.is_valid():
logger.info('Received valid formset data')
if prescription_id:
logger.info(
'Retrieved prescription record as foreign key for prescription entry records'
)
prescription = Prescription.objects.get(pk=prescription_id)
else:
logger.info(
'Created prescription record as foreign key for prescription entry records'
)
prescription = Prescription(medical_record=medical_record,
recorded_by=request.user,
recorded_date=localtime(now()))
with atomic():
log_enter_atomic_trans()
for idx, form in enumerate(formset):
data = form.cleaned_data
if prescription_id:
logger.info(
'Retrieving latest prescription entry for prescription record [%s] and medicine [%s]'
% (prescription_id, form.instance.medicine))
prescription_entry = PrescriptionEntry.objects.filter(
prescription=prescription,
medicine=form.instance.medicine,
is_deleted=False).order_by('-id').first()
else:
logger.info(
'Creating latest prescription entry for prescription record [%s] and medicine category [%s]'
% (prescription_id, form.instance.medicine))
prescription_entry = form.save(commit=False)
if prescription_entry:
if prescription_id and data['prescribe']:
logger.info(
'Updating details of prescription entry')
prescription_entry.dosage = form.instance.dosage
prescription_entry.package = form.instance.package
prescription_entry.frequency = form.instance.frequency
prescription_entry.designated_time = form.instance.designated_time
elif prescription_id and not data['prescribe']:
logger.info(
'Removing details of prescription entry')
prescription_entry.is_deleted = True
elif data['prescribe']:
logger.info(
'Saving details of new prescription entry')
prescription.save()
prescription_entry.prescription = prescription
else:
logger.info(
'Skipping prescription entry for [%s]' %
form.instance.medicine)
continue
else:
logger.warn(
'No value for prescription_entry variable. Using value from form'
)
if data['prescribe']:
prescription.save()
prescription_entry = form.save(commit=False)
prescription_entry.prescription = prescription
else:
logger.info(
'Skipping prescription entry for [%s]' %
form.instance.medicine)
continue
prescription_entry.updated_by = request.user
prescription_entry.updated_date = localtime(now())
prescription_entry.save()
log_exit_atomic_trans()
logger.info('Redirecting to prescription profile page')
response = redirect(prescription)
else:
logger.warn('Received invalid formset data')
response = render(request, self.template_name, {
'formset': formset,
'medical_record': medical_record
})
log_end_time()
return response
def post(self, request, *args, **kwargs):
"""
Validates formset data. Creates a new laboratory record then saves laboratory result records with
non-empty value.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
logger.info('Retrieving laboratory record ID from POST data')
laboratory_id = request.POST.get('laboratory')
logger.info('Retrieving medical record from database using medical record ID from POST data')
medical_record = MedicalRecord.objects.get(pk=int(request.POST.get('medical_record')))
if 'cancel' in request.POST:
logger.info('User clicked cancel')
if medical_record:
logger.info('Redirecting to medical record page')
return HttpResponseRedirect(
reverse_lazy(MEDICAL_RECORD_PROFILE_PAGE_NAME, kwargs={'id': medical_record.id}))
else:
logger.info('Redirecting to home page')
return HttpResponseRedirect(reverse_lazy(DASHBOARD_PAGE_NAME))
else:
logger.info('User clicked submit')
logger.info('Retrieving POST data')
formset = self.LaboratoryFormSet(request.POST)
logger.info('Validating formset values')
if formset.is_valid():
logger.info('Received valid formset data')
if laboratory_id:
logger.info('Retrieved laboratory record as foreign key for laboratory result records')
laboratory = Laboratory.objects.get(pk=int(laboratory_id))
else:
logger.info('Created laboratory record as foreign key for laboratory result records')
laboratory = Laboratory(medical_record=medical_record, recorded_by=request.user,
recorded_date=localtime(now()))
with atomic():
log_enter_atomic_trans()
for form in formset:
if laboratory_id:
logger.info(
'Retrieving latest laboratory result for laboratory record [%s] and test detail [%s]' % (
laboratory_id, form.instance.laboratory_test_detail))
laboratory_result = LaboratoryResult.objects.filter(laboratory=laboratory,
laboratory_test_detail=form.instance.laboratory_test_detail,
is_deleted=False).order_by(
'-id').first()
else:
logger.info(
'Creating latest laboratory result for laboratory record [%s] and test detail [%s]' % (
laboratory_id, form.instance.laboratory_test_detail))
laboratory_result = form.save(commit=False)
if laboratory_result:
logger.info('Received a non-empty instance for laboratory result')
if laboratory_id and form.instance.value:
if form.instance.value == laboratory_result.value:
logger.info('No change was detected')
else:
logger.info('Updating details of laboratory laboratory')
laboratory_result.value = form.instance.value
elif laboratory_id and not form.instance.value:
logger.info('Removing details of laboratory result')
laboratory_result.is_deleted = True
elif laboratory_result.value:
logger.info('Saving details of new laboratory result for new laboratory record')
laboratory.save()
laboratory_result.laboratory = laboratory
else:
logger.info('Skipping laboratory result for [%s]' % form.instance.laboratory_test_detail)
continue
else:
logger.info('No value for laboratory_result variable. Using value from form')
if form.instance.value:
logger.info('Saving details of new laboratory result for previous laboratory record')
laboratory.save()
laboratory_result = form.save(commit=False)
laboratory_result.laboratory = laboratory
else:
logger.info('Skipping laboratory result for [%s]' % form.instance.laboratory_test_detail)
continue
laboratory_result.updated_by = request.user
laboratory_result.updated_date = localtime(now())
laboratory_result.save()
log_exit_atomic_trans()
logger.info('Redirecting to laboratory profile page')
response = redirect(laboratory)
else:
logger.warn('Received invalid formset data')
response = render(request, self.template_name, {'formset': formset, 'medical_record': medical_record})
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves laboratory test detail records from database then creates a formset depending on the
number of retrieved rows. Pre-fills patient field using relationship between retrieved value of
[medical] argument from URI
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
initial = []
logger.info('Retrieving medical record ID from request URI')
medical_record_id = request.GET.get('medical')
logger.info('Retrieving laboratory record ID from request URI')
laboratory_id = kwargs.get('id')
laboratory_test_details = LaboratoryTestDetail.objects.all()
if medical_record_id:
logger.info('Retrieved medical record ID value [%s]' % medical_record_id)
medical_record = MedicalRecord.objects.get(pk=int(medical_record_id))
for test_detail in laboratory_test_details:
logger.info('Creating display labels for [%s]' % test_detail)
display = '%s: %s' % (str(test_detail.laboratory_test), test_detail.description)
if test_detail.laboratory_measurement_unit.is_displayable:
display += ' (%s)' % test_detail.laboratory_measurement_unit
logger.info('Created display is [%s]' % display)
initial.append({'laboratory_test_detail_display': display,
'laboratory_test_detail': test_detail,
'value': ''})
formset = self.LaboratoryFormSet(initial=initial)
response = render(request, self.template_name,
{'formset': formset, 'medical_record': medical_record, 'submit_label': 'Record'})
elif laboratory_id:
logger.info('Retrieved laboratory record ID value [%s]' % laboratory_id)
laboratory = Laboratory.objects.get(pk=int(laboratory_id))
for test_detail in laboratory_test_details:
logger.info(
'Retrieving non-deleted laboratory results for laboratory record [%s] and test detail [%s]' % (
laboratory_id, test_detail))
laboratory_result = LaboratoryResult.objects.filter(laboratory=laboratory,
laboratory_test_detail=test_detail,
is_deleted=False)
logger.info('Creating display labels for [%s]' % test_detail)
display = '%s: %s' % (str(test_detail.laboratory_test), test_detail.description)
if test_detail.laboratory_measurement_unit.is_displayable:
display += ' (%s)' % test_detail.laboratory_measurement_unit
logger.info('Created display is [%s]' % display)
if laboratory_result.count() > 1:
logger.warn('Laboratory result count is greater than expected for test detail [%s]' % test_detail)
logger.info('Defaulting to first retrieved item')
initial.append({'laboratory_test_detail_display': display,
'laboratory_test_detail': laboratory_result.first().laboratory_test_detail,
'value': laboratory_result.first().value, })
elif laboratory_result.count() < 1:
logger.info('No related laboratory result record for test detail [%s]' % test_detail)
initial.append({'laboratory_test_detail_display': display,
'laboratory_test_detail': test_detail,
'value': '', })
else:
logger.info('Successful laboratory result retrieval for test detail [%s]' % test_detail)
initial.append({'laboratory_test_detail_display': display,
'laboratory_test_detail': laboratory_result.last().laboratory_test_detail,
'value': laboratory_result.last().value, })
formset = self.LaboratoryFormSet(initial=initial)
response = render(request, self.template_name,
{'formset': formset, 'medical_record': laboratory.medical_record,
'submit_label': 'Update', 'laboratory': laboratory})
else:
logger.warn('Did not receive value for required patient parameter')
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def post(self, request, *args, **kwargs):
"""
Validates formset data. Creates a new prescription record then saves prescription entry records with
prescribe value set to True.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
if 'cancel' in request.POST:
logger.info('User clicked cancel')
return HttpResponseRedirect(reverse_lazy(DASHBOARD_PAGE_NAME))
else:
logger.info('User clicked submit')
logger.info('Retrieving POST data')
formset = self.PrescriptionFormSet(request.POST)
prescription_id = request.POST.get('prescription')
medical_record = MedicalRecord.objects.get(pk=int(request.POST.get('medical_record')))
logger.info('Validating formset values')
if formset.is_valid():
logger.info('Received valid formset data')
if prescription_id:
logger.info('Retrieved prescription record as foreign key for prescription entry records')
prescription = Prescription.objects.get(pk=prescription_id)
else:
logger.info('Created prescription record as foreign key for prescription entry records')
prescription = Prescription(medical_record=medical_record, recorded_by=request.user,
recorded_date=localtime(now()))
with atomic():
log_enter_atomic_trans()
for idx, form in enumerate(formset):
data = form.cleaned_data
if prescription_id:
logger.info(
'Retrieving latest prescription entry for prescription record [%s] and medicine [%s]' % (
prescription_id, form.instance.medicine))
prescription_entry = PrescriptionEntry.objects.filter(prescription=prescription,
medicine=form.instance.medicine,
is_deleted=False).order_by(
'-id').first()
else:
logger.info(
'Creating latest prescription entry for prescription record [%s] and medicine category [%s]' % (
prescription_id, form.instance.medicine))
prescription_entry = form.save(commit=False)
if prescription_entry:
if prescription_id and data['prescribe']:
logger.info('Updating details of prescription entry')
prescription_entry.dosage = form.instance.dosage
prescription_entry.package = form.instance.package
prescription_entry.frequency = form.instance.frequency
prescription_entry.designated_time = form.instance.designated_time
elif prescription_id and not data['prescribe']:
logger.info('Removing details of prescription entry')
prescription_entry.is_deleted = True
elif data['prescribe']:
logger.info('Saving details of new prescription entry')
prescription.save()
prescription_entry.prescription = prescription
else:
logger.info('Skipping prescription entry for [%s]' % form.instance.medicine)
continue
else:
logger.warn('No value for prescription_entry variable. Using value from form')
if data['prescribe']:
prescription.save()
prescription_entry = form.save(commit=False)
prescription_entry.prescription = prescription
else:
logger.info('Skipping prescription entry for [%s]' % form.instance.medicine)
continue
prescription_entry.updated_by = request.user
prescription_entry.updated_date = localtime(now())
prescription_entry.save()
log_exit_atomic_trans()
logger.info('Redirecting to prescription profile page')
response = redirect(prescription)
else:
logger.warn('Received invalid formset data')
response = render(request, self.template_name, {'formset': formset, 'medical_record': medical_record})
log_end_time()
return response
def search_matches(view, search_type, search_param):
"""
Function for retrieving records based on model type and search parameters.
:param view:
:param search_type:
:param search_param:
:return:
"""
log_start_time()
query_set = None
if view.model == Patient:
search_query = {
'1':
view.model.objects.filter(
last_name__icontains=search_param).order_by('first_name'),
'2':
view.model.objects.filter(
first_name__icontains=search_param).order_by('last_name'),
'3':
view.model.objects.filter(
birth_date__icontains=search_param).order_by('last_name'),
}
elif view.model == MedicalRecord:
search_query = {
'1':
view.model.objects.filter(
patient__last_name__icontains=search_param).order_by(
'-recorded_date'),
'2':
view.model.objects.filter(
recorded_by__last_name__icontains=search_param).order_by(
'-recorded_date'),
'3':
view.model.objects.filter(recorded_date__icontains=search_param).
order_by('-recorded_date')
}
else:
search_query = {
'1':
view.model.objects.filter(
medical_record__patient__last_name__icontains=search_param).
order_by('-recorded_date'),
'2':
view.model.objects.filter(
recorded_by__last_name__icontains=search_param).order_by(
'-recorded_date'),
'3':
view.model.objects.filter(recorded_date__icontains=search_param
).order_by('-recorded_date')
}
try:
logger.info(
'Retrieving record for model [%s] with search type [%s] and search parameter [%s]'
% (view.model, search_type, search_param))
query_set = search_query.get(search_type)
view.search_count = query_set.count()
except KeyError:
logger.warn('Received invalid search type and search parameter')
view.error_message = INVALID_SEARCH_TYPE
return query_set
def post(self, request, *args, **kwargs):
"""
Validates formset data. Creates a new medication record even for updates then saves medication entry records
with non-empty description value.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
error_message = None
logger.info('Retrieving medication ID from POST data')
medication_id = request.POST.get('medication')
logger.info('Retrieving patient ID from POST data')
patient = Patient.objects.get(pk=int(request.POST.get('patient')))
if medication_id:
logger.info('Updating medication record')
submit_label = 'Update'
else:
logger.info('Creating new medication record')
submit_label = 'Record'
if 'cancel' in request.POST:
logger.info('User clicked cancel - Redirecting to [%s]' % DASHBOARD_PAGE_NAME)
response = HttpResponseRedirect(reverse_lazy(DASHBOARD_PAGE_NAME))
elif 'add' in request.POST:
logger.info('User clicked add - Creating formset with 1 extra form and delete functionality')
MedicationFormSet = formset_factory(self.form_class, can_delete=True, extra=1)
initial_formset = MedicationFormSet(request.POST)
logger.info('Retrieving form data from POST request for formset pre-fill')
formset = MedicationFormSet(initial=extract_form_data(initial_formset))
response = render(request, self.template_name,
{'formset': formset, 'patient': patient, 'submit_label': submit_label})
elif 'delete' in request.POST:
logger.info('User clicked delete - Removing deleted forms from formset')
MedicationFormSet = formset_factory(self.form_class, can_delete=True, extra=0)
initial_formset = MedicationFormSet(request.POST)
if len(initial_formset.deleted_forms) >= len(initial_formset):
logger.warn('Number of deleted forms is equal to total number of forms')
error_message = CANNOT_DELETE_ALL_FORMS
formset = MedicationFormSet(initial=extract_form_data(initial_formset))
else:
logger.info('Removing deleted forms from initial formset')
initial = []
for form in initial_formset:
data = {}
for field in form.fields:
data[field] = form[field].value()
if not data['DELETE']:
logger.info('Form is removed from formset')
initial.append(data)
else:
logger.info('Form is included in formset')
formset = MedicationFormSet(initial=initial)
response = render(request, self.template_name,
{'formset': formset, 'patient': patient, 'submit_label': submit_label,
'error_message': error_message})
else:
logger.info('User clicked submit - Validating forms')
MedicationFormSet = formset_factory(self.form_class, can_delete=True, extra=0)
formset = MedicationFormSet(request.POST)
logger.info('Validating formset values')
if formset.is_valid():
logger.info('Received valid formset data')
medication = Medication(patient=patient, recorded_by=request.user,
recorded_date=localtime(now()))
with atomic():
log_enter_atomic_trans()
for idx, form in enumerate(formset):
if None in form.cleaned_data:
pass
else:
break
medication.save()
medication_entry = form.save(commit=False)
medication_entry.medication = medication
medication_entry.save()
log_exit_atomic_trans()
if medication.id:
logger.info('Redirecting to medication profile page')
response = redirect(medication)
else:
logger.info('Did not receive any valid form')
error_message = MINIMUM_REQUIRED_NUMBER_OF_FORMS
MedicationFormSet = formset_factory(self.form_class)
response = render(request, self.template_name,
{'formset': MedicationFormSet(), 'patient': patient, 'submit_label': submit_label,
'error_message': error_message})
else:
logger.warn('Received invalid formset data')
response = render(request, self.template_name,
{'formset': formset, 'patient': patient, 'submit_label': submit_label})
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves medicine records from database then creates a formset depending on the number of retrieved rows. Pre-
fills patient field using relationship between retrieved value of [medical] argument from URI
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
initial = []
logger.info('Retrieving medicine records for form creation')
medicines = Medicine.objects.all()
logger.info('Retrieving medical record ID from request URI')
medical_record_id = request.GET.get('medical')
logger.info('Retrieving prescription record ID from request URI')
prescription_id = kwargs.get('id')
if medical_record_id:
logger.info('Retrieved medical record ID value [%s]' % medical_record_id)
medical_record = MedicalRecord.objects.get(pk=medical_record_id)
logger.info('Creating initial medicine and medicine_label for each form in formset')
for medicine in medicines:
initial.append({'medicine': medicine, 'medicine_label': medicine})
formset = self.PrescriptionFormSet(initial=initial)
response = render(request, self.template_name,
{'formset': formset, 'medical_record': medical_record, 'submit_label': 'Record'})
elif prescription_id:
logger.info('Retrieved prescription record ID value [%s]' % prescription_id)
prescription = Prescription.objects.get(pk=prescription_id)
logger.info('Creating')
for medicine in medicines:
prescription_entry = PrescriptionEntry.objects.filter(prescription=prescription, medicine=medicine,
is_deleted=False)
if prescription_entry.count() > 1:
logger.warn('Prescription entry count is greater than expected for medicine [%s]' % medicine)
logger.info('Defaulting to first retrieved item')
initial.append({'medicine': prescription_entry.first().medicine,
'medicine_label': prescription_entry.first().medicine,
'dosage': prescription_entry.first().dosage,
'package': prescription_entry.first().package,
'frequency': prescription_entry.first().frequency,
'designated_time': prescription_entry.first().designated_time,
'prescribe': True, })
elif prescription_entry.count() < 1:
logger.info('No related prescription entry for medicine [%s]' % medicine)
initial.append({'medicine': medicine,
'medicine_label': medicine, })
else:
logger.info('Successful prescription entry retrieval for medicine [%s]' % medicine)
initial.append({'medicine': prescription_entry.last().medicine,
'medicine_label': prescription_entry.last().medicine,
'dosage': prescription_entry.last().dosage,
'package': prescription_entry.last().package,
'frequency': prescription_entry.last().frequency,
'designated_time': prescription_entry.last().designated_time,
'prescribe': True, })
formset = self.PrescriptionFormSet(initial=initial)
response = render(request, self.template_name,
{'formset': formset, 'medical_record': prescription.medical_record,
'submit_label': 'Update', 'prescription': prescription})
else:
logger.warn('Did not receive value for required medical parameter')
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
def get(self, request, *args, **kwargs):
"""
Retrieves records from database using value of [medical] argument from URI. Uses a default list
page template.
:param request: HttpRequest
:param args: variable arguments
:param kwargs: named arguments
:return: HttpResponse
"""
log_start_time()
context = {}
logger.info('Retrieving medical record id from request URI')
patient_id = request.GET.get('patient')
medical_record_id = request.GET.get('medical')
if medical_record_id:
medical_record = MedicalRecord.objects.get(
pk=request.GET.get('medical'))
patient = medical_record.patient
logger.info(
'Retrieving records using medical record id value [%s]' %
medical_record.id)
result_list = self.model.objects.filter(
medical_record=medical_record).order_by('-recorded_date')
self.search_link = create_link(self.list_page_name,
{'medical': medical_record.id})
context.update({
'left_link':
create_link(self.left_link_page_name,
{'medical': medical_record.id}),
'left_link_icon':
self.left_link_icon,
'left_link_name':
self.left_link_name,
'center_link':
medical_record.get_absolute_url(),
'center_link_icon':
MEDICAL_RECORD_PAGE_ICON,
'center_link_name':
'Medical Record',
'right_link':
create_link(self.right_link_page_name,
{'medical': medical_record.id}),
'right_link_icon':
self.right_link_icon,
'right_link_name':
self.right_link_name,
'add_link':
create_link(self.add_page_name,
{'medical': medical_record.id}),
})
elif patient_id:
patient = Patient.objects.get(pk=request.GET.get('patient'))
logger.info('Retrieving records using patient id value [%s]' %
patient.id)
result_list = self.model.objects.filter(
patient=patient).order_by('-recorded_date')
self.search_link = create_link(self.list_page_name,
{'patient': patient.id})
context.update({
'add_link':
create_link(self.add_page_name, {'patient': patient.id}),
})
else:
logger.warn('Did not receive value for required medical parameter')
return redirect(DASHBOARD_PAGE_NAME, permanent=True)
paginator = Paginator(result_list, MAX_LIST_ITEMS_PER_PAGE)
self.search_count = result_list.count()
logger.info('Calling common functions for listing results')
select_search_results(self, request, paginator)
modify_page_links(self, paginator)
validate_response(self)
context.update({
'searches': self.searches,
'patient': patient,
'pages': self.pages,
'search_link': self.search_link,
'error_message': self.error_message,
'page_title': self.page_title,
'page_icon': self.page_icon,
'current_page': self.current_page,
'next_link': self.next_link,
'next_link_class': self.next_link_class,
'previous_link': self.previous_link,
'previous_link_class': self.previous_link_class,
})
log_end_time()
return render(request, self.template_name, context)
def __init__(self, *args, **kwargs):
"""
Retrieves initial data for diagnosis category choices during form creation. However, data is retrieved from
[data] instead of [initial] in kwargs after performing form validation
:param args: variable arguments
:param kwargs: named arguments
"""
super(DiagnosisEntryForm, self).__init__(*args, **kwargs)
log_start_time()
choice_list = None
logger.info('Setting default label and widget for value and remark fields')
self.fields['value'].label = ''
self.fields['remark'].label = ''
self.fields['value'].widget = NonInputWidget()
self.fields['remark'].widget = NonInputWidget()
logger.info('Retrieving diagnosis category')
if kwargs.get('data'):
logger.info('Performing initial form creation')
diagnosis_category = DiagnosisCategory.objects.get(
pk=kwargs.get('data')['%s-diagnosis_category' % kwargs.get('prefix')])
elif kwargs.get('initial'):
logger.info('Performed form validation')
diagnosis_category = kwargs.get('initial')['diagnosis_category']
else:
logger.warn('Did not receive value for required diagnosis_category parameter')
diagnosis_category = None
if diagnosis_category:
logger.info('Setting label for value field using [%s]' % diagnosis_category)
self.fields['value'].label = diagnosis_category
logger.info('Instantiating form helper for [%s]' % diagnosis_category)
self.helper = DiagnosisCategoryFormHelper(diagnosis_category)
logger.info('Retrieving choices from database for [%s]' % diagnosis_category)
choice_list = DiagnosisCategoryChoice.objects.filter(
diagnosis_category=diagnosis_category).order_by('order')
else:
logger.warn('diagnosis_category is none or empty')
if choice_list:
logger.info(
'Creating dropdown widget for value field using retrieved choices for [%s]' % diagnosis_category)
self.fields['value'].widget = Select(choices=list(choice_list.values_list('description',
'description')))
logger.info('Checking if list for [%s] contains a general term' % diagnosis_category)
for choice in choice_list:
if choice.is_general_term:
logger.info('Setting CSS class and widget for [%s]' % choice)
self.fields['remark'].widget = Textarea(
attrs={'placeholder': 'Additional Information', 'style': 'height: 5em;', })
else:
pass
else:
logger.info('No choice list found for [%s]' % diagnosis_category)
log_end_time()
def process_search(self, request):
"""
Receives either POST or GET request then proceeds to search records depending on search query
:param request: HttpRequest instance
:return: HttpResponse instance
"""
log_start_time()
form = initialise_form(self, request)
if form is not None and form.is_valid():
logger.info('Received a valid form')
self.search_type = form.cleaned_data['search_type']
self.search_param = form.cleaned_data['search_param']
logger.info('Creating search link using page name [%s]' %
self.list_page_name)
self.search_link = create_link(self.list_page_name, {
'search_param': self.search_param,
'search_type': self.search_type
})
if self.search_param:
logger.info('Received a non-empty search parameter')
results = search_matches(self, self.search_type,
self.search_param)
else:
logger.info('Did not receive a valid search parameter')
results = self.model.objects.all().order_by('-id')
paginator = Paginator(results, MAX_LIST_ITEMS_PER_PAGE)
logger.info('Calling common functions for listing records')
select_search_results(self, request, paginator)
modify_page_links(self, paginator)
validate_response(self)
response = render(
request, self.template_name, {
'form':
form,
'search_link':
self.search_link,
'searches':
self.searches,
'search_type_labels':
self.search_labels,
'act_search_type_label':
self.search_labels.get(self.search_type),
'pages':
self.pages,
'page_title':
self.page_title,
'page_icon':
self.page_icon,
'current_page':
self.current_page,
'error_message':
self.error_message,
'next_link':
self.next_link,
'next_link_class':
self.next_link_class,
'previous_link':
self.previous_link,
'previous_link_class':
self.previous_link_class,
})
else:
response = redirect(DASHBOARD_PAGE_NAME, permanent=True)
log_end_time()
return response
