def __call__(self, inputs):
package, glob, filename = inputs
if package and filename:
data = systemnodes.get_data(glob, package)
self._output = data.get(filename)
return (self._output,)
else:
return (self._output,)
def __call__(self, inputs):
package, glob, filename = inputs
if package and filename:
data = systemnodes.get_data(glob, package)
self._output = data.get(filename)
return (self._output, )
else:
return (self._output, )
def update_filenames_combobox(self):
''' Update the combo box with the filenames '''
package = self.node.get_input(0)
globpattern = self.node.get_input(1)
if self.updating or package is None or globpattern is None: return
self.updating = True
self.filenames_combobox.clear()
self.filename2filepath_mapping.clear()
try:
__import__(package, fromlist=[''])
except:
pass
else:
data = systemnodes.get_data(globpattern, package)
self.filename2filepath_mapping.update(data)
self.filenames_combobox.addItems(self.filename2filepath_mapping.keys())
self.updating = False
def update_filenames_combobox(self):
''' Update the combo box with the filenames '''
package = self.node.get_input(0)
globpattern = self.node.get_input(1)
if self.updating or package is None or globpattern is None: return
self.updating = True
self.filenames_combobox.clear()
self.filename2filepath_mapping.clear()
try:
__import__(package, fromlist=[''])
except:
pass
else:
data = systemnodes.get_data(globpattern, package)
self.filename2filepath_mapping.update(data)
self.filenames_combobox.addItems(
self.filename2filepath_mapping.keys())
self.updating = False
def calculate_LAI_TC_ViaCaribu(stand_MTG,
pattern=None,
thermal_time=0,
output_directory=''):
# light string
from alinea.caribu import lightString
directional_vector = lightString.lightString(1.0, 0.0, 46.0)
# par4.opt
from openalea.core import pkgmanager
pm = pkgmanager.PackageManager()
pm.init(verbose=False)
from openalea.core.system import systemnodes
opt_filepath = systemnodes.get_data('par4.opt',
'alinea.caribu.data').values().pop()
# read
from openalea.file import files
opt_str = files.FileRead()(opt_filepath)
# CaribuScene
from alinea.caribu import CaribuScene_nodes
caribu_scene = CaribuScene_nodes.newCaribuScene(stand_MTG,
directional_vector,
pattern, opt_str)[0]
# addsoil_2
from alinea.adel.macro import addsoil_2
caribu_scene = addsoil_2.addsoil_2(caribu_scene, 2.0)
# Caribu
caribu_scene, energy = CaribuScene_nodes.runCaribu(caribu_scene, True, {
'SphereDiameter': 0.5,
'Nz': 5,
'Zmax': 2,
'keepFF': False
}, True)
# LIE
from alinea.caribu import selectOutput
canestra_output_1 = selectOutput.selectOutput(energy, 'Opt')[0]
canestra_output_2 = selectOutput.selectOutput(energy, 'Einc')[0]
from alinea.caribu import filterby
filtered = filterby.filterby(canestra_output_1, canestra_output_2,
lambda x: x == 0.0)[0]
total_soil = sum(filtered)
total_incident = CaribuScene_nodes.getIncidentEnergy(caribu_scene)[2]
efficience = (total_incident - total_soil) / float(total_incident)
# LAIg
canestra_output_1 = selectOutput.selectOutput(energy, 'Opt')[0]
canestra_output_2 = selectOutput.selectOutput(energy, 'Area')[0]
soil_filtered = filterby.filterby(canestra_output_1, canestra_output_2,
lambda x: x == 0.0)[0]
soil_area = sum(soil_filtered)
canestra_output_1 = selectOutput.selectOutput(energy, 'Opt')[0]
canestra_output_2 = selectOutput.selectOutput(energy, 'Area')[0]
canopy_triangles_filtered = filterby.filterby(canestra_output_1,
canestra_output_2,
lambda x: x > 0.0)[0]
canopy_triangles_area = sum(canopy_triangles_filtered)
canestra_output_1 = selectOutput.selectOutput(energy, 'Opt')[0]
canestra_output_2 = selectOutput.selectOutput(energy, 'Area')[0]
green_triangles_filtered = filterby.filterby(canestra_output_1,
canestra_output_2,
lambda x: x == 1.0)[0]
green_triangles_area = sum(green_triangles_filtered)
canestra_output_1 = selectOutput.selectOutput(energy, 'Opak')[0]
canestra_output_2 = selectOutput.selectOutput(energy, 'Area')[0]
opak_leaves_filtered = filterby.filterby(canestra_output_1,
canestra_output_2,
lambda x: x > 0.0)[0]
opak_leaves_area = sum(opak_leaves_filtered)
canestra_output_1 = selectOutput.selectOutput(energy, 'Opak')[0]
canestra_output_2 = selectOutput.selectOutput(energy, 'Opt')[0]
opak_opt_filtered = filterby.filterby(canestra_output_1, canestra_output_2,
lambda x: x > 0.0)[0]
LAI = opak_leaves_area / float(soil_area)
from alinea.adel.macro import AND
LAIg = sum(AND.AND(opak_leaves_filtered,
opak_opt_filtered)[0]) / float(soil_area)
CAI = (canopy_triangles_area / float(soil_area) - LAI) / 2 + LAI
CAIg = (green_triangles_area / float(soil_area) - LAIg) / 2 + LAIg
# genFilepath
import os
LAI_PAI_path = os.path.join(output_directory,
'%s%s' % ('_caribuoutput_', '.csv'))
# Write_LAI_PAI
from alinea.adel.macro import write_LAI_PAI
LAI_PAI_path = write_LAI_PAI.Write_LAI_PAI(thermal_time, efficience, CAI,
CAIg, LAI, LAIg, LAI_PAI_path)
return LAI_PAI_path,
