def __init__(self):
Node.__init__(self)
self.add_input(name='axes')
self.add_input(name='text', interface=IStr, value=None)
self.add_input(name='xy', interface=ITuple, value=(0, 0))
self.add_input(name='xytext', interface=ITuple, value=(0, 0))
self.add_input(name='xycoords',
interface=IEnumStr(tools.xycoords.keys()),
value='data')
self.add_input(name='textcoords',
interface=IEnumStr(tools.xycoords.keys()),
value='data')
self.add_input(name='arrowprops',
interface=IDict,
value={
'arrowstyle': '->',
'connectionstyle': 'arc3'
})
self.add_input(name='bbox', interface=IDict, value=None)
self.add_input(name='kwargs(text properties)',
interface=IDict,
value={})
self.add_output(name='output')
def __init__(self):
from matplotlib.pyplot import rcParams
Node.__init__(self)
self.add_input(name='axes')
self.add_input(name='fname', interface=IStr, value=None)
self.add_input(name='transparent', interface=IBool, value=False)
self.add_input(name='dpi',
interface=IInt(40, 200, 1),
value=rcParams['figure.dpi'])
self.add_input(name='facecolor',
interface=IEnumStr(tools.colors.keys()),
value='white')
self.add_input(name='edgecolor',
interface=IEnumStr(tools.colors.keys()),
value='w')
self.add_input(name='orientation',
interface=IEnumStr(tools.orientation_fig.keys()),
value='portrait')
self.add_input(name='papertype',
interface=IEnumStr(tools.papertypes.keys()),
value=None)
self.add_input(name='format',
interface=IEnumStr(tools.extensions.keys()),
value='png')
self.add_input(name='kwargs', interface=IDict, value={})
def __init__(self):
Node.__init__(self)
#[left, bottom, width, height]
self.add_input(name='input')
self.add_input(name='clear', interface=IBool, value=True)
self.add_input(name='left', interface=IFloat(0, 1, 0.01), value=0.12)
self.add_input(name='bottom', interface=IFloat(0, 1, 0.01), value=0.12)
self.add_input(name='width', interface=IFloat(0, 1, 0.01), value=0.78)
self.add_input(name='height', interface=IFloat(0, 1, 0.01), value=0.78)
self.add_input(name='axisbg',
interface=IEnumStr(tools.colors.keys()),
value='white')
self.add_input(name='frameon', interface=IBool, value=True)
self.add_input(name='polar', interface=IBool, value=False)
self.add_input(name='xscale',
interface=IEnumStr(tools.scale.keys()),
value='linear')
self.add_input(name='yscale',
interface=IEnumStr(tools.scale.keys()),
value='linear')
self.add_input(name='xticks',
interface=IEnumStr(tools.ticks.keys()),
value='auto')
self.add_input(name='yticks',
interface=IEnumStr(tools.ticks.keys()),
value='auto')
self.add_input(name='kwargs', interface=IDict, value={})
self.add_output(name='axes', interface=IDict, value={})
self.axe = None
def __init__(self):
Node.__init__(self)
CustomizeAxes.__init__(self)
self.add_input(name='axes')
self.add_input(name="shadow", interface=IBool, value=False)
self.add_input(name="location",
interface=IEnumStr(tools.locations.keys()),
value=0)
self.add_input(name="numpoints", interface=IInt, value=2)
self.add_input(name="markerscale",
interface=IFloat(0.1, 10, 0.1),
value=1)
self.add_input(name="fancybox", interface=IBool, value=True)
self.add_input(name="ncol", interface=IInt(1, 10), value=1)
self.add_input(name="mode",
interface=IEnumStr({
'None': 'None',
'Expanded': 'exapanded'
}),
value=None)
self.add_input(name="title", interface=IStr, value=None)
#rodo scatterpoints
#borderpad the fractional whitespace inside the legend border
# labelspacing the vertical space between the legend entries
# handlelength the length of the legend handles
# handletextpad the pad between the legend handle and text
# borderaxespad the pad between the axes and legend border
# columnspacing the spacing between columns
#borderaxespad
self.add_input(name="prop", interface=IDict, value={})
#p = pylab.matplotlib.font_manager.FontProperties(size=26)
self.add_output(name="kwds", interface=IDict, value={})
def __init__(self):
Node.__init__(self)
#self.get_input('axes')
self.add_input(name='arrowstyle',
interface=IEnumStr(tools.arrowstyles.keys()),
value='simple')
self.add_input(name='connectionstyle',
interface=IEnumStr(tools.connectionstyles.keys()),
value='arc3')
self.add_input(name='relpos', interface=ITuple, value=(0.5, 0.5))
self.add_input(name='patchA', interface=IDict, value=None)
self.add_input(name='patchB', interface=IDict, value=None)
self.add_input(name='shrinkA', interface=IDict, value=None)
self.add_input(name='shrinkB', interface=IDict, value=None)
self.add_input(name='mutation_scale', interface=IFloat, value=1)
self.add_input(name='mutation_aspect', interface=IFloat, value=1)
self.add_input(name='pathPatch', interface=IDict, value=None)
self.add_input(name='ec',
interface=IEnumStr(tools.linestyles.keys()),
value='solid')
self.add_input(name='kwargs', interface=IDict, value={})
#todo for connection style, connectionstyle="angle,angleA=0,angleB=-90,rad=10"
#todo for arrowstyle:head_length=0.4,head_width=0.2 tail_width=0.3,shrink_factor=0.5
self.add_output(name='dict', interface=IDict, value={})
def __init__(self):
self.daxis = {'in': 'in', 'out': 'out', 'both': 'both'}
self.ddirection = {'in': 'in', 'out': 'out'}
Node.__init__(self)
CustomizeAxes.__init__(self)
self.add_input(name='axes')
self.add_input(name='axis',
interface=IEnumStr(self.daxis.keys()),
value='both')
self.add_input(name='reset', interface=IBool, value=False)
self.add_input(name='direction',
interface=IEnumStr(self.ddirection.keys()),
value='in')
self.add_input(name='length', interface=IInt, value=4)
self.add_input(name='width', interface=IInt, value=1)
self.add_input(name='color',
interface=IEnumStr(tools.colors.keys()),
value='black')
self.add_input(name='pad', interface=IInt, value=1)
self.add_input(name='labelsize', interface=IInt, value=12)
self.add_input(name='labelcolor',
interface=IEnumStr(tools.colors.keys()),
value='black')
self.add_input(name='zorder', interface=IInt, value=0)
self.add_input(name='bottom', interface=IBool, value=False)
self.add_input(name='top', interface=IBool, value=False)
self.add_input(name='left', interface=IBool, value=False)
self.add_input(name='right', interface=IBool, value=False)
self.add_input(name='labelbottom', interface=IBool, value=True)
self.add_input(name='labeltop', interface=IBool, value=False)
self.add_input(name='labelleft', interface=IBool, value=True)
self.add_input(name='labelright', interface=IBool, value=False)
def __init__(self):
Node.__init__(self)
self.add_input(name="Canestra Scene")
self.add_input(name="plants", interface=IEnumStr(['all']), value='all')
self.add_input(name="optical species", interface=IEnumStr(['all']),
value='all')
self.add_input(name="transparency", interface=IEnumStr(['all']),
value='all')
self.add_input(name="color map", interface=IFunction)
self.add_output(name="PlantGL scene")
self.can_scene = None
def __init__(self):
Node.__init__(self)
self.add_input(name='alpha', interface=IFloat(0, 1, 0.1), value=1)
self.add_input(name='color',
interface=IEnumStr(tools.colors.keys()),
value='k')
self.add_input(name='fontproperties',
interface=IDict,
value={
'family': 'sans-serif',
'size': 12,
'stretch': 'normal',
'style': 'normal',
'weight': 'normal',
'variant': 'normal'
})
self.add_input(name='horizontalalignment',
interface=IEnumStr(tools.horizontalalignment.keys()),
value='left')
self.add_input(name='rotation',
interface=IFloat(-180, 180, 10),
value=0)
self.add_input(name='verticalalignment',
interface=IEnumStr(tools.verticalalignment.keys()),
value='baseline')
self.add_input(
name='kwargs',
interface=IDict,
value={
#'agg_filter': None,
# 'animated': False,
# 'axes': None,
# 'clip_box': None,
# 'clip_on': True,
# 'clip_path': None,
# 'contains': None,
# 'figure': None,
# 'gid': None,
# 'path_effects': None,
# 'picker': None,
# 'rasterized': None,
# 'rotation_mode': None,
# 'snap': None,
# 'text': '',
# 'transform': None,
'url': None,
# 'visible': True,
'zorder': 3
})
self.add_output(name='kwds', interface=IDict, value={})
def __init__(self):
Node.__init__(self)
self.add_input(name='name', interface=IStr, value='leaf')
self.add_input(name='resource',
interface=IFloat(0, 1, 0.01),
value=0.2)
self.add_input(name='maturation', interface=IFloat, value=21)
self.add_input(name='growth_function',
interface=IEnumStr(['sigmoid']),
value='sigmoid')
self.add_input(name='efficiency_method',
interface=IEnumStr(['unity', 'sigmoid']),
value='unity')
self.add_input(name='store_data', interface=IBool, value=False)
self.add_output(name='section_name', interface=IStr, value=None)
self.add_output(name='options', interface=IDict, value={})
def __init__(self):
Node.__init__(self)
self.add_input(name="axes", interface=ISequence, value=[])
self.add_input(name="num", interface=IInt, value=1)
self.add_input(name="figsize", interface=ISequence, value=(8, 6))
self.add_input(name="dpi", interface=IFloat, value=80.)
self.add_input(name="facecolor",
interface=IEnumStr(tools.colors.keys()),
value='white')
self.add_input(name="edgecolor",
interface=IEnumStr(tools.colors.keys()),
value='black')
self.add_input(name="frameon", interface=IBool, value=True)
self.add_input(name="subplotpars", interface=ISequence, value=None)
self.add_input(name="kwds", interface=IDict, value={})
self.add_output(name="kwds", interface=IDict, value={})
def __init__(self):
Node.__init__(self)
self.add_input(name='colormap',
interface=IEnumStr(tools.cmaps.keys()),
value='jet')
self.add_input(name='show', interface=IBool, value=False)
self.add_input(name='showall', interface=IBool, value=False)
self.add_output(name='output')
def __init__(self):
Node.__init__(self)
funs = self.distr_func.keys()
funs.sort()
self.add_input(name="Type", interface=IEnumStr(funs), value=funs[0])
self.add_output(name="Distribution", interface=None)
def __init__(self):
Node.__init__(self)
self.add_input(name='boxstyle',
interface=IEnumStr(tools.boxstyles.keys()),
value='round')
self.add_input(name='fc', interface=IFloat(0, 1, 0.1), value=0.8)
self.add_input(name='pad', interface=IFloat(0, 1, 0.1), value=0.3)
self.add_output(name='output', interface=IDict)
def __init__(self):
Node.__init__(self)
self.typedict = dict(zip(self.codename, self.typecodes))
self.add_input(name='typecode',
interface=IEnumStr(self.codename),
value='signed integer (4)')
self.add_input(name='values', interface=ISequence)
self.add_output(name='array', interface=ISequence)
def __init__(self):
inputs = [
{
'name': 'x',
'interface': None,
'value': None
},
{
'name': 'y',
'interface': None,
'value': None
},
{
'name': 'z',
'interface': None,
'value': None
},
{
'name': 'marker',
'interface': IEnumStr(tools.markers.keys()),
'value': 'circle'
},
{
'name': 'markersize',
'interface': IFloat,
'value': 10
},
{
'name': 'linestyle',
'interface': IEnumStr(tools.linestyles.keys()),
'value': 'solid'
},
{
'name': 'color',
'interface': IEnumStr(tools.colors.keys()),
'value': 'blue'
},
{
'name': 'kwargs',
'interface': IDict,
'value': {}
},
]
Plotting.__init__(self, inputs)
def __init__(self):
Node.__init__(self)
CustomizeAxes.__init__(self)
self.add_input(name="axes")
self.add_input(name="text", interface=IStr, value=None)
self.add_input(name="fontsize", interface=IFloat, value=12.)
self.add_input(name="labelpad", interface=IInt, value=None)
self.add_input(name="verticalalignment",
interface=IEnumStr(tools.verticalalignment.keys()),
value='top')
self.add_input(name="horizontalalignment",
interface=IEnumStr(tools.horizontalalignment.keys()),
value='center')
self.add_input(name="text properties", interface=IDict, value={})
self.add_input(name='kwargs', interface=IDict, value={})
self.add_output(name="axes")
def __init__(self):
Node.__init__(self)
CustomizeAxes.__init__(self)
self.add_input(name='axes')
self.add_input(name='b', interface=IBool, value=True)
self.add_input(name='which',
interface=IEnumStr(tools.which.keys()),
value='major')
self.add_input(name='linestyle',
interface=IEnumStr(tools.linestyles.keys()),
value='dotted')
self.add_input(name='color',
interface=IEnumStr(tools.colors.keys()),
value='black')
self.add_input(name='linewidth', interface=IFloat, value=1.0)
self.add_input(name='kwargs', interface=IDict, value={})
self.add_output(name='axes')
def __init__(self):
Node.__init__(self)
funs = self.distr_func.keys()
funs.sort()
self.add_input(name="Type", interface=IEnumStr(funs), value=funs[0])
self.add_input(name="Cluster number", interface=IInt(min=1), value=2)
self.add_input(name="Cluster radius",
interface=IFloat(0.01, 1, 0.01),
value=0.2)
self.add_output(name="Distribution", interface=None)
def __init__(self):
Node.__init__(self)
#self.add_input(name="text", interface=IStr)
#self.add_input(name="fontdict", interface=IDict, value=None)
self.add_input(name="fontsize", interface=IFloat, value=12.)
self.add_input(name="alpha",
interface=IFloat(0., 1., step=0.1),
value=0.5)
self.add_input(name="color",
interface=IEnumStr(tools.colors.keys()),
value='blue')
self.add_input(name='backgroundcolor',
interface=IEnumStr(tools.colors.keys()),
value='white')
self.add_input(name='rotation', interface=IFloat, value='horizontal')
#self.add_input(name="withdash", interface=IBool, value=False)
self.add_input(name="kwargs", interface=IDict, value={})
self.add_input(name="fontproperties", interface=IDict, value={})
self.add_output(name="kwargs", interface=IDict, value=None)
def __init__(self):
Node.__init__(self)
self.add_input(name='family',
interface=IEnumStr(tools.families.keys()),
value='serif')
self.add_input(name='style',
interface=IEnumStr(tools.styles.keys()),
value='normal')
self.add_input(name='variant',
interface=IEnumStr(tools.variants.keys()),
value='normal')
self.add_input(name='weight',
interface=IEnumStr(tools.weights.keys()),
value='normal')
self.add_input(name='stretch',
interface=IEnumStr(tools.streches.keys()),
value='normal')
self.add_input(name='size',
interface=IEnumStr(tools.sizes.keys()),
value='medium')
self.add_input(name='fname', interface=IStr, value=None)
self.add_input(name='kwargs', interface=IDict, value={})
#self.add_input(name='_init', _init=None)
#todo style, variant and strethc do not seem to work
self.add_output(name='kwds', interface=IDict, value={})
def __init__(self):
Node.__init__(self)
self.add_input(name='alpha', interface=IFloat(0, 1, 0.1), value=1.)
self.add_input(name='axes', interface=IDict, value={})
self.add_input(name='color',
interface=IEnumStr(tools.colors.keys()),
value='None')
self.add_input(name='edgecolor',
interface=IEnumStr(tools.colors.keys()),
value='black')
self.add_input(name='facecolor',
interface=IEnumStr(tools.colors.keys()),
value='blue')
self.add_input(name='figure', interface=IDict, value=None)
self.add_input(name='fill', interface=IBool, value=True)
self.add_input(name='label', interface=IStr, value=None)
self.add_input(name='linestyle',
interface=IEnumStr(tools.linestyles.keys()),
value='solid')
self.add_input(name='linewidth', interface=IFloat, value=None)
self.add_output(name='output')
def __init__(self):
Node.__init__(self)
self.add_input(name='width', interface=IFloat(0, 100, 0.1), value=4)
#figure, xytip and xybase are not needed
self.add_input(name='headwidth',
interface=IFloat(0, 100, 0.1),
value=12)
self.add_input(name='frac', interface=IFloat(0, 1, 0.05), value=0.1)
self.add_input(name='alpha', interface=IFloat(0, 1, 0.05), value=1)
self.add_input(name='color',
interface=IEnumStr(tools.colors.keys()),
value='blue')
self.add_input(name='kwargs', interface=IDict, value={})
self.add_output(name='output', interface=IDict, value={})
def __init__(self):
from matplotlib import font_manager
Node.__init__(self)
CustomizeAxes.__init__(self)
self.add_input(name="axes")
self.add_input(name="text", interface=IStr, value=None)
self.add_input(name="fontsize", interface=IFloat, value=12)
self.add_input(name="color",
interface=IEnumStr(tools.colors.keys()),
value='black')
self.add_input(name='kwargs', interface=IDict, value={})
self.add_output(name='axes')
def __init__(self):
Node.__init__(self)
self.add_input(name='time')
self.add_input(name='method',
interface=IEnumStr(
growth.GrowthFunction.growth_function_methods),
value='sigmoid')
self.add_input(name='inf bound', interface=IFloat, value=0)
self.add_input(name='sup bound', interface=IFloat, value=1)
self.add_input(name='growth rate',
interface=IFloat(-5, 5, 0.05),
value=1)
self.add_input(name='maturation', interface=IFloat, value=12)
self.add_input(name='nu', interface=IFloat(0, 100, 0.1), value=1)
self.add_output(name='data')
def __init__(self):
Node.__init__(self)
self.add_input(name='name', interface=IStr, value='general')
self.add_input(name='verbose', interface=IBool, value=True)
self.add_input(name='max_step', interface=IInt, value=210)
self.add_input(name='max_elements', interface=IInt, value=5000)
self.add_input(name='time_step', interface=IInt, value=1)
self.add_input(name='save_image', interface=IBool, value=False)
self.add_input(name='movie', interface=IBool, value=False)
self.add_input(name='tag', interface=IStr, value='test')
self.add_input(name='starting_year', interface=IFloat, value=2000)
self.add_input(name='colorcode',
interface=IEnumStr(
['normal', 'order', 'length', 'allocated']),
value='normal')
self.add_input(name='fast', interface=IBool, value=False)
self.add_output(name='section_name', interface=IStr, value=None)
self.add_output(name='options', interface=IDict, value={})
widgetmodule=None,
widgetclass=None, )
__all__.append('generate_scene')
selectOutput = Fa(uid="96612dac4e8311e6bff6d4bed973e64a",
name='selectOutput',
authors='M. Chelle,C. Fournier (wralea authors)',
description='Select a variable in the output dictionnary of caribu',
category='Unclassified',
nodemodule='alinea.caribu.CaribuScene_nodes',
nodeclass='selectOutput',
inputs=[
{'interface': None, 'name': 'output', 'value': None,
'desc': ''},
{'interface': IEnumStr(
enum=['area', 'Eabs', 'Ei', 'Ei_inf', 'Ei_sup']),
'name': 'variable', 'value': 'Ei',
'desc': 'see details on help tab'},
{'interface': IStr, 'name': 'band', 'value': None}],
outputs=[
{'interface': None, 'name': 'selected output',
'desc': ''},
{'interface': None, 'name': 'key', 'desc': ''}],
widgetmodule=None, widgetclass=None, )
__all__.append('selectOutput')
getIncidentEnergy = Fa(uid="96612dad4e8311e6bff6d4bed973e64a",
name='getIncidentEnergy',
authors='C. Fournier',
category='scene.light',
'linearregressiontoplot',
'linearregressionscipy',
]
glm = Fa(
uid="e7f010b84e7811e6bff6d4bed973e64a",
name="glm (rpy)",
description="Compute the generalized linear regression",
category="openalea.stat.regression.regression",
nodemodule="regression",
nodeclass="Glm",
inputs=(
dict(name="X", interface=ISequence, showwidget=True),
dict(name="Y", interface=ISequence, showwidget=True),
dict(name="Family",
interface=IEnumStr(['binomial', 'Gamma', 'gaussian', 'poisson']),
showwidget=True),
),
outputs=(dict(name="Glm", interface=IDict), ),
)
linearregression = Fa(
uid="e7f010b94e7811e6bff6d4bed973e64a",
name="linear regression (rpy)",
description="Compute the linear regression",
category="regression",
nodemodule="openalea.stat.regression.regression",
nodeclass="LinearRegression",
inputs=(
dict(name="X", interface=ISequence, showwidget=True),
dict(name="Y", interface=ISequence, showwidget=True),
__institutes__ = 'INRIA/CIRAD'
__description__ = 'Plottools library'
__url__ = 'http://openalea.gforge.inria.fr'
__all__ = []
vsplot = Fa(uid="0ddb02764e7711e6bff6d4bed973e64a",
name="VS Plot",
description="Plot a list of 2D points plotable objects",
category="Visualization,plot",
nodemodule="openalea.plotools.plotable",
nodeclass="display_VisualSequence",
inputs=(
dict(name='vis_seq_list', interface=None, showwidget=False),
dict(name='visualisation',
interface=IEnumStr(['PointLine', 'Hist']),
value='PointLine'),
dict(name='title', interface=IStr, value='MyPlot'),
dict(name='xlabel', interface=IStr, value='x-axis-label'),
dict(name='ylabel', interface=IStr, value='y-axis-label'),
dict(name='figure', interface=IInt(0, 10), value=0),
),
outputs=(dict(name='result', interface=None), ))
__all__.append('vsplot')
ptline_style = Fa(
uid="0ddb02774e7711e6bff6d4bed973e64a",
name="PointLine Style",
description="Allows us to edit VisualSequence plot",
category="Visualization,plot",
def __init__(self):
Node.__init__(self)
self.add_input(name='window', interface=IEnumStr(self.windows), value='hanning')
self.add_input(name='n', interface=IInt, value=256)
self.add_input(name='beta (kaiser only)', interface=IFloat(0.,100.,1), value=14.)
self.add_output(name='array')
def __init__(self):
Node.__init__(self)
self.add_input(name='origin', interface=IEnumStr(origins), value=None)
self.add_output(name='output', interface=IDict, value={})