def _convert_kg1_node_to_swagger_node(
self, neo4j_node: Dict[str, any]) -> Tuple[str, Node]:
swagger_node = Node()
swagger_node_key = neo4j_node.get('id')
swagger_node.name = neo4j_node.get('name')
node_category = neo4j_node.get('category')
swagger_node.category = eu.convert_to_list(node_category)
other_properties = ["symbol", "description", "uri"]
swagger_node.attributes = self._create_swagger_attributes(
other_properties, neo4j_node)
return swagger_node_key, swagger_node
def _create_ngd_node(kg2_node_key: str,
kg2_node: Node) -> Tuple[str, Node]:
ngd_node = Node()
ngd_node_key = kg2_node_key
ngd_node.name = kg2_node.name
ngd_node.category = kg2_node.category
ngd_node.attributes = [
attribute for attribute in kg2_node.attributes
if attribute.name in {"iri", "description"}
]
return ngd_node_key, ngd_node
def _convert_kg2c_node_to_swagger_node(
self, neo4j_node: Dict[str, any]) -> Tuple[str, Node]:
swagger_node = Node()
swagger_node_key = neo4j_node.get('id')
swagger_node.name = neo4j_node.get('name')
swagger_node.category = neo4j_node.get('types')
# Add all additional properties on KG2c nodes as swagger Attribute objects
other_properties = [
"description", "iri", "equivalent_curies", "publications",
"all_names"
]
swagger_node.attributes = self._create_swagger_attributes(
other_properties, neo4j_node)
return swagger_node_key, swagger_node
def _convert_kg2c_node_to_trapi_node(
self, neo4j_node: Dict[str, any]) -> Tuple[str, Node]:
node = Node()
node_key = neo4j_node.get('id')
node.name = neo4j_node.get('name')
node.category = eu.convert_to_list(neo4j_node.get('category'))
# Add all additional properties on KG2c nodes as TRAPI Attribute objects
other_properties = [
"iri", "description", "all_names", "all_categories",
"expanded_categories", "equivalent_curies", "publications"
]
node.attributes = self._create_trapi_attributes(
other_properties, neo4j_node)
return node_key, node
def _convert_kg2_node_to_trapi_node(
self, neo4j_node: Dict[str, any]) -> Tuple[str, Node]:
node = Node()
node_key = neo4j_node.get('id')
node.name = neo4j_node.get('name')
node.category = eu.convert_to_list(neo4j_node.get('category'))
# Add all additional properties on KG2 nodes as TRAPI Attribute objects
other_properties = [
"iri", "full_name", "description", "publications", "synonym",
"provided_by", "deprecated", "update_date"
]
node.attributes = self._create_trapi_attributes(
other_properties, neo4j_node)
return node_key, node
def _convert_kg2_node_to_swagger_node(
self, neo4j_node: Dict[str, any]) -> Tuple[str, Node]:
swagger_node = Node()
swagger_node_key = neo4j_node.get('id')
swagger_node.name = neo4j_node.get('name')
node_category = neo4j_node.get('category_label')
swagger_node.category = eu.convert_to_list(node_category)
# Add all additional properties on KG2 nodes as swagger Attribute objects
other_properties = [
"full_name", "description", "iri", "publications", "synonym",
"category", "provided_by", "deprecated", "update_date"
]
swagger_node.attributes = self._create_swagger_attributes(
other_properties, neo4j_node)
return swagger_node_key, swagger_node
