def profile_index() -> str:
tabs = {'profile': Tab(
'profile',
content=display_info(get_form_settings(ProfileForm(), True)),
buttons=[manual('tools/profile')])}
if is_authorized('contributor'):
tabs['modules'] = Tab(
'modules',
content=display_info(get_form_settings(ModulesForm(), True)),
buttons=[manual('tools/profile')])
tabs['display'] = Tab(
'display',
content=display_info(get_form_settings(DisplayForm(), True)),
buttons=[manual('tools/profile')])
if not app.config['DEMO_MODE']:
tabs['profile'].buttons += [
button(_('edit'), url_for('profile_settings', category='profile')),
button(_('change password'), url_for('profile_password'))]
tabs['modules'].buttons.append(
button(_('edit'), url_for('profile_settings', category='modules')))
tabs['display'].buttons.append(
button(_('edit'), url_for('profile_settings', category='display')))
return render_template(
'tabs.html',
tabs=tabs,
title=_('profile'),
crumbs=[_('profile')])
def sex(id_: int) -> Union[str, Response]:
entity = Entity.get_by_id(id_, types=True)
buttons = [manual('tools/anthropological_analyses')]
if is_authorized('contributor'):
buttons.append(button(_('edit'), url_for('sex_update', id_=entity.id)))
data = []
for item in SexEstimation.get_types(entity):
type_ = g.types[item['id']]
feature = SexEstimation.features[type_.name]
data.append({
'name': type_.name,
'category': feature['category'],
'feature_value': feature['value'],
'option_value': SexEstimation.options[item['description']],
'value': item['description']
})
return render_template('anthropology/sex.html',
entity=entity,
buttons=buttons,
data=data,
result=print_result(entity),
crumbs=[
entity,
[
_('anthropological analyses'),
url_for('anthropology_index', id_=entity.id)
],
_('sex estimation')
])
def note_view(id_: int) -> str:
note = User.get_note_by_id(id_)
if not note['public'] and note['user_id'] != current_user.id:
abort(403) # pragma: no cover
entity = Entity.get_by_id(note['entity_id'])
buttons: list[str] = [manual('tools/notes')]
if note['user_id'] == current_user.id:
buttons += [
button(_('edit'), url_for('note_update', id_=note['id'])),
button(_('delete'), url_for('note_delete', id_=note['id']))
]
elif is_authorized('manager'): # pragma: no cover
buttons += [
button(_('set private'), url_for('note_set_private',
id_=note['id']))
]
tabs = {
'info':
Tab('info',
buttons=buttons,
content=f"<h1>{uc_first(_('note'))}</h1>{note['text']}")
}
return render_template('tabs.html',
tabs=tabs,
entity=entity,
crumbs=[[
_(entity.class_.view),
url_for('index', view=entity.class_.view)
],
link(entity),
_('note')])
def admin_check_dates() -> str:
tabs = {
'dates':
Tab('invalid_dates',
table=Table(
['name', 'class', 'type', 'created', 'updated',
'description'])),
'link_dates':
Tab('invalid_link_dates', table=Table(['link', 'domain', 'range'])),
'involvement_dates':
Tab('invalid_involvement_dates',
table=Table(
['actor', 'event', 'class', 'involvement', 'description']))
}
for entity in Entity.get_invalid_dates():
tabs['dates'].table.rows.append([
link(entity), entity.class_.label,
link(entity.standard_type),
format_date(entity.created),
format_date(entity.modified), entity.description
])
for link_ in Link.get_invalid_link_dates():
name = ''
if link_.property.code == 'OA7': # pragma: no cover
name = 'relation'
elif link_.property.code == 'P107': # pragma: no cover
name = 'member'
elif link_.property.code in ['P11', 'P14', 'P22', 'P23']:
name = 'involvement'
tabs['link_dates'].table.rows.append([
link(
_(name),
url_for('link_update', id_=link_.id,
origin_id=link_.domain.id)),
link(link_.domain),
link(link_.range)
])
for link_ in Link.invalid_involvement_dates():
event = link_.domain
actor = link_.range
data = [
link(actor),
link(event), event.class_.label,
link_.type.name if link_.type else '', link_.description,
link(_('edit'),
url_for('link_update', id_=link_.id, origin_id=actor.id))
]
tabs['involvement_dates'].table.rows.append(data)
for tab in tabs.values():
tab.buttons = [manual('admin/data_integrity_checks')]
if not tab.table.rows: # pragma: no cover
tab.content = _('Congratulations, everything looks fine!')
return render_template(
'tabs.html',
tabs=tabs,
title=_('admin'),
crumbs=[[_('admin'), f"{url_for('admin_index')}#tab-data"],
_('check dates')])
def anthropology_index(id_: int) -> Union[str, Response]:
entity = Entity.get_by_id(id_)
buttons = [
manual('tools/anthropological_analyses'),
button(_('sex estimation'), url_for('sex', id_=entity.id)),
print_result(entity)
]
return render_template('anthropology/index.html',
entity=entity,
buttons=buttons,
crumbs=[entity,
_('anthropological analyses')])
def admin_index(action: Optional[str] = None,
id_: Optional[int] = None) -> Union[str, Response]:
if is_authorized('manager'):
if id_ and action == 'delete_user':
user = User.get_by_id(id_)
if not user \
or user.id == current_user.id \
or (user.group == 'admin' and not is_authorized('admin')):
abort(403)
User.delete(id_)
flash(_('user deleted'), 'info')
elif action == 'remove_logo':
Settings.set_logo()
return redirect(f"{url_for('admin_index')}#tab-file")
tables = {
'user':
Table([
'username', 'name', 'group', 'email', 'newsletter', 'created',
'last login', 'entities'
],
defs=[{
'className': 'dt-body-right',
'targets': 7
}]),
'content':
Table(['name'] + list(app.config['LANGUAGES']))
}
for user in User.get_all():
count = User.get_created_entities_count(user.id)
email = user.email \
if is_authorized('manager') or user.settings['show_email'] else ''
tables['user'].rows.append([
link(user), user.real_name, user.group, email,
_('yes') if user.settings['newsletter'] else '',
format_date(user.created),
format_date(user.login_last_success),
format_number(count) if count else ''
])
for item, languages in get_content().items():
content = [uc_first(_(item))]
for language in app.config['LANGUAGES']:
content.append(sanitize(languages[language], 'text'))
content.append(link(_('edit'), url_for('admin_content', item=item)))
tables['content'].rows.append(content)
form = None
if is_authorized('admin'):
form = TestMailForm()
if form.validate_on_submit(
) and g.settings['mail']: # pragma: no cover
subject = _('Test mail from %(site_name)s',
site_name=g.settings['site_name'])
body = _('This test mail was sent by %(username)s',
username=current_user.username)
body += f" {_('at')} '{request.headers['Host']}"
if send_mail(subject, body, form.receiver.data):
flash(
_('A test mail was sent to %(email)s.',
email=form.receiver.data), 'info')
else:
form.receiver.data = current_user.email
tabs = {
'files':
Tab(_('files'),
buttons=[
manual('entity/file'),
button(_('edit'), url_for('admin_settings', category='files'))
if is_authorized('manager') else '',
button(_('list'), url_for('index', view='file')),
button(_('file'), url_for('insert', class_='file'))
],
content=render_template('admin/file.html',
info=get_form_settings(FilesForm()),
disk_space_info=get_disk_space_info())),
'user':
Tab(_('user'),
table=tables['user'],
buttons=[
manual('admin/user'),
button(_('activity'), url_for('user_activity')),
button(_('newsletter'), url_for('admin_newsletter'))
if is_authorized('manager') and g.settings['mail'] else '',
button(_('user'), url_for('user_insert'))
if is_authorized('manager') else ''
])
}
if is_authorized('admin'):
tabs['general'] = Tab(
'general',
content=display_info(get_form_settings(GeneralForm())),
buttons=[
manual('admin/general'),
button(_('edit'), url_for('admin_settings',
category='general')),
button(_('system log'), url_for('admin_log'))
])
tabs['email'] = Tab(
'email',
content=display_info(get_form_settings(MailForm())),
buttons=[
manual('admin/mail'),
button(_('edit'), url_for('admin_settings', category='mail'))
])
if g.settings['mail']:
tabs['email'].content += display_form(form)
if is_authorized('manager'):
tabs['modules'] = Tab(_('modules'),
content=f"""
<h1>{_('Defaults for new user')}</h1>
{display_info(get_form_settings(ModulesForm()))}""",
buttons=[
manual('admin/modules'),
button(
_('edit'),
url_for('admin_settings',
category='modules'))
])
tabs['map'] = Tab('map',
content=display_info(get_form_settings(MapForm())),
buttons=[
manual('admin/map'),
button(_('edit'),
url_for('admin_settings', category='map'))
])
tabs['content'] = Tab('content',
content=tables['content'].display(),
buttons=[manual('admin/content')])
if is_authorized('contributor'):
tabs['data'] = Tab('data',
content=render_template(
'admin/data.html',
imports=Import.get_all_projects(),
info=get_form_settings(ApiForm())))
return render_template('tabs.html',
tabs=tabs,
title=_('admin'),
crumbs=[_('admin')])
def admin_orphans() -> str:
header = [
'name', 'class', 'type', 'system type', 'created', 'updated',
'description'
]
tabs = {
'orphans':
Tab('orphans', table=Table(header)),
'unlinked':
Tab('unlinked', table=Table(header)),
'types':
Tab('type',
table=Table(
['name', 'root'],
[[link(type_), link(g.types[type_.root[0]])]
for type_ in Type.get_type_orphans()])),
'missing_files':
Tab('missing_files', table=Table(header)),
'orphaned_files':
Tab('orphaned_files', table=Table(['name', 'size', 'date', 'ext'])),
'circular':
Tab('circular_dependencies',
table=Table(['entity'],
[[link(e)]
for e in Entity.get_entities_linked_to_itself()]))
}
for entity in filter(lambda x: not isinstance(x, ReferenceSystem),
Entity.get_orphans()):
tabs['unlinked' if entity.class_.
view else 'orphans'].table.rows.append([
link(entity),
link(entity.class_),
link(entity.standard_type), entity.class_.label,
format_date(entity.created),
format_date(entity.modified), entity.description
])
# Orphaned file entities with no corresponding file
entity_file_ids = []
for entity in Entity.get_by_class('file', types=True):
entity_file_ids.append(entity.id)
if not get_file_path(entity):
tabs['missing_files'].table.rows.append([
link(entity),
link(entity.class_),
link(entity.standard_type), entity.class_.label,
format_date(entity.created),
format_date(entity.modified), entity.description
])
# Orphaned files with no corresponding entity
for file in app.config['UPLOAD_DIR'].iterdir():
if file.name != '.gitignore' \
and os.path.isfile(file) \
and int(file.stem) not in entity_file_ids:
tabs['orphaned_files'].table.rows.append([
file.stem,
convert_size(file.stat().st_size),
format_date(
datetime.datetime.utcfromtimestamp(file.stat().st_ctime)),
file.suffix,
link(_('download'), url_for('download_file',
filename=file.name)),
delete_link(file.name,
url_for('admin_file_delete', filename=file.name))
])
for tab in tabs.values():
tab.buttons = [manual('admin/data_integrity_checks')]
if not tab.table.rows:
tab.content = _('Congratulations, everything looks fine!')
if tabs['orphaned_files'].table.rows and is_authorized('admin'):
text = uc_first(_('delete all files without corresponding entities?'))
tabs['orphaned_files'].buttons.append(
button(_('delete all files'),
url_for('admin_file_delete', filename='all'),
onclick=f"return confirm('{text}')"))
return render_template(
'tabs.html',
tabs=tabs,
title=_('admin'),
crumbs=[[_('admin'), f"{url_for('admin_index')}#tab-data"],
_('orphans')])