def run_four_peaks_exploringSA():
N=200
T=N/5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
iters = [50, 100, 250, 500, 1000, 2500, 5000, 10000, 25000, 30000, 35000, 40000, 45000, 50000]
num_repeats = 5
all_sa_results = []
all_sa_times = []
coolings = [0.15, 0.35, 0.55, 0.75, 0.95]
for cooling in coolings:
sa_results = []
sa_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
sa = SimulatedAnnealing(1E11, cooling, hcp)
fit = FixedIterationTrainer(sa, i)
fit.train()
end = time.time()
sa_results.append(ef.value(sa.getOptimal()))
sa_times.append(end - start)
print "SA cooling " + str(cooling) + ": " + str(ef.value(sa.getOptimal()))
all_sa_results.append(sa_results)
all_sa_results.append(sa_times)
with open('four_peaks_exploringSA.csv', 'w') as csvfile:
writer = csv.writer(csvfile)
for sa_results in all_sa_results:
writer.writerow(sa_results)
for sa_times in all_sa_times:
writer.writerow(sa_times)
return all_sa_results, all_sa_times
samples = 200
try:
tokeep = int(sys.argv[3])
except:
tokeep = 10
runs = 10
sys.stdout = open("fourpeaks_MIMIC-%d-%d-%d.txt" % (N, samples, tokeep), "w")
#N=200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
t0 = time.time()
calls = []
results = []
for _ in range(runs):
mimic = MIMIC(samples, tokeep, pop)
fit = FixedIterationTrainer(mimic, 1000)
from array import array
"""
Commandline parameter(s):
none
"""
N=200
T=N/5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, 200000)
fit.train()
print "RHC: " + str(ef.value(rhc.getOptimal()))
sa = SimulatedAnnealing(1E11, .95, hcp)
import opt.prob.MIMIC as MIMIC
import opt.prob.ProbabilisticOptimizationProblem as ProbabilisticOptimizationProblem
import shared.FixedIterationTrainer as FixedIterationTrainer
from array import array
"""
Commandline parameter(s):
none
"""
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
# ------------RUNNING SAME NUMBER OF ITERATIONS ACROSS ALGORTIHMS--------
# Store Metrics
rhc_times = []
rhc_acc = []
sa_times = []
print "Function Evaluations: " + str(ef.getFunctionEvaluations() - iters)
print "Iters: " + str(iters)
print "####"
"""
Commandline parameter(s):
none
"""
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
rhc = RandomizedHillClimbing(hcp)
train(rhc, "RHC", ef, 40000)
sa = SimulatedAnnealing(1E11, .95, hcp)
train(sa, "SA", ef, 50000)
if co_type == 2:
cf = tpf
elif co_type == 3:
cf = uf
else:
cf = sf
sys.stdout = open("fourpeaks_ga_%d-%d-%d-%d-%d.txt" % (N, ga_pop, co_type, ga_keep, ga_mut), "w")
runs = 10
# N=200
T = N / 5
fill = [2] * N
ranges = array("i", fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
mf = DiscreteChangeOneMutation(ranges)
# print "Ga settings:\npop:%d\ncrossovertype:%d\ncrossoverrate:%d\nmutationrate:%d\n\n" % (ga_pop,co_type,ga_keep,ga_mut_type)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
t0 = time.time()
calls = []
results = []
for _ in range(runs):
# ga_pop = N*5
ga = StandardGeneticAlgorithm(ga_pop, ga_keep, ga_mut, gap)
fit = FixedIterationTrainer(ga, 1000)
fitness = fit.train()
for algo in ["RHC", "MIMIC", "GA", "SA"]:
with open(OUTFILE_BASE + algo + ".csv", 'w') as f:
f.write("iterations,training_time,fitness\n")
"""
Commandline parameter(s):
none
"""
# N=200
for N in xrange(10, 1000):
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, N)
start = time.time()
fit.train()
end = time.time()
training_time = end - start
maxiters_mimic = [25*i for i in range(1,21)] SA_start_temp = 1E9 SA_temp_decay = 0.5 GA_popsize = 20 GA_toMate = 10 GA_mutationPercent = 0.3 GA_toMutate = int(GA_mutationPercent*GA_toMate) MIMIC_samples = 100 MIMIC_toKeep = 10 #======================== #print ranges ef = FourPeaksEvaluationFunction(T) odd = DiscreteUniformDistribution(ranges) nf = DiscreteChangeOneNeighbor(ranges) mf = DiscreteChangeOneMutation(ranges) cf = SingleCrossOver() df = DiscreteDependencyTree(.1, ranges) hcp = GenericHillClimbingProblem(ef, odd, nf) gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf) pop = GenericProbabilisticOptimizationProblem(ef, odd, df) #print odd """ #======================= # Random Hiil Climbing #=======================
def run_four_peaks():
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
iters = [50, 100, 250, 500, 1000, 2500, 5000, 10000, 25000, 50000, 100000]
num_repeats = 5
rhc_results = []
rhc_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, i)
fit.train()
end = time.time()
rhc_results.append(ef.value(rhc.getOptimal()))
rhc_times.append(end - start)
print "RHC: " + str(ef.value(rhc.getOptimal()))
sa_results = []
sa_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
sa = SimulatedAnnealing(1E11, .95, hcp)
fit = FixedIterationTrainer(sa, i)
fit.train()
end = time.time()
sa_results.append(ef.value(sa.getOptimal()))
sa_times.append(end - start)
print "SA: " + str(ef.value(sa.getOptimal()))
ga_results = []
ga_times = []
for i in iters:
print(i)
for j in range(num_repeats):
start = time.time()
ga = StandardGeneticAlgorithm(200, 100, 10, gap)
fit = FixedIterationTrainer(ga, i)
fit.train()
end = time.time()
ga_results.append(ef.value(ga.getOptimal()))
ga_times.append(end - start)
print "GA: " + str(ef.value(ga.getOptimal()))
mimic_results = []
mimic_times = []
for i in iters[0:6]:
print(i)
for j in range(num_repeats):
start = time.time()
mimic = MIMIC(200, 20, pop)
fit = FixedIterationTrainer(mimic, i)
fit.train()
end = time.time()
mimic_results.append(ef.value(mimic.getOptimal()))
mimic_times.append(end - start)
print "MIMIC: " + str(ef.value(mimic.getOptimal()))
with open('four_peaks.csv', 'w') as csvfile:
writer = csv.writer(csvfile)
writer.writerow(rhc_results)
writer.writerow(rhc_times)
writer.writerow(sa_results)
writer.writerow(sa_times)
writer.writerow(ga_results)
writer.writerow(ga_times)
writer.writerow(mimic_results)
writer.writerow(mimic_times)
return rhc_results, rhc_times, sa_results, sa_times, ga_results, ga_times, mimic_results, mimic_times
import opt.prob.MIMIC as MIMIC
import opt.prob.ProbabilisticOptimizationProblem as ProbabilisticOptimizationProblem
import shared.FixedIterationTrainer as FixedIterationTrainer
from array import array
"""
Commandline parameter(s):
none
"""
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
iterations = range(100, 50000, 100)
rhc_results = []
sa_results = []
ga_results = []
import time
import opt.prob.ProbabilisticOptimizationProblem as ProbabilisticOptimizationProblem
import shared.FixedIterationTrainer as FixedIterationTrainer
import opt.example.KnapsackEvaluationFunction as KnapsackEvaluationFunction
import opt.example.FourPeaksEvaluationFunction as FourPeaksEvaluationFunction
from array import array
"""
Commandline parameter(s):
none
"""
N = 1000
T = N / 4
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
initial_distribution = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mutation_function = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hill_climbing_problem = GenericHillClimbingProblem(ef, initial_distribution,
nf)
genetic_problem = GenericGeneticAlgorithmProblem(ef, initial_distribution,
mutation_function, cf)
probablistic_optimization = GenericProbabilisticOptimizationProblem(
ef, initial_distribution, df)
from time import time
import shared.FixedIterationTrainer as FixedIterationTrainer
from array import array
"""
Commandline parameter(s):
none
"""
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ITERATIONS = 5000
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
rhc = RandomizedHillClimbing(hcp)
sa = SimulatedAnnealing(1E11, .95, hcp)
ga = StandardGeneticAlgorithm(200, 100, 10, gap)
mimic = MIMIC(200, 20, pop)
rhc_f = open('out/op/fourpeaks/rhc.csv', 'w')
none
"""
iterations_data = {}
iterations_file = "four_peaks_data.pickle"
if os.path.isfile(iterations_file):
stdout.write("\nFour Peaks Data found.\n")
exit(0)
N=200
T=N/10
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
x = xrange(200, 3200, 200)
optimal_value = {'RHC': [], 'SA': [], 'GA': [], 'MIMIC': []}
def main():
N=200
tempDenom = 5
T=N/tempDenom
fill = [2] * N
ranges = array('i', fill)
iterations = 2000
gaIters = 1000
mimicIters = 1000
gaPop = 200
gaMate = 100
gaMutate = 10
mimicSamples = 200
mimicToKeep = 20
saTemp = 1E11
saCooling = .95
alg = 'all'
run = 0
settings = []
try:
opts, args = getopt.getopt(sys.argv[1:], "ahn:rsgN:m:t:i:", ["gaIters=", "mimicIters=","gaPop=", "gaMate=", "gaMutate=", "mimicSamples=", "mimicToKeep=", "saTemp=", "saCooling="])
except:
print 'knapsack.py -i <iterations> -n <NUM_ITEMS> -c <COPIES_EACH> -w <MAX_WEIGHT> -v <MAX_VOLUME>'
sys.exit(2)
for opt, arg in opts:
if opt == '-h':
print 'knapsack.py -i <iterations> -n <NUM_ITEMS> -c <COPIES_EACH> -w <MAX_WEIGHT> -v <MAX_VOLUME>'
sys.exit(1)
elif opt == '-i':
iterations = int(arg)
elif opt == '-N':
N = int(arg)
elif opt == '-t':
T = float(arg)
elif opt == '-d':
tempDenom = int(arg)
elif opt == '-r':
alg = 'RHC'
elif opt == '-a':
alg = 'all'
elif opt == '-s':
alg = 'SA'
elif opt == '-g':
alg = 'GA'
elif opt == '-m':
alg = 'MIMIC'
elif opt == '--gaPop':
gaPop = int(arg)
elif opt == '--gaMate':
gaMate = int(arg)
elif opt == '--gaMutate':
gaMutate = int(arg)
elif opt == '--mimicSamples':
mimicSamples = int(arg)
elif opt == '--mimicToKeep':
mimicToKeep = int(arg)
elif opt == '--saTemp':
saTemp = float(arg)
elif opt == '--saCooling':
saCooling = float(arg)
elif opt == '--gaIters':
gaIters = int(arg)
elif opt == '--mimicIters':
mimicIters = int(arg)
elif opt == '-n':
run = int(arg)
vars = {
'N':N,
'tempDenom':tempDenom,
'T':T,
'fill':fill,
'ranges':ranges,
'iterations' :iterations,
'gaIters':gaIters,
'mimicIters':mimicIters,
'gaPop' :gaPop,
'gaMate' :gaMate,
'gaMutate' :gaMutate,
'mimicSamples' : mimicSamples,
'mimicToKeep' : mimicToKeep,
'saTemp' : saTemp,
'saCooling' : saCooling,
'alg' : alg,
'run' : run
}
settings = getSettings(alg, settings, vars)
T=N/tempDenom
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
if alg == 'RHC' or alg == 'all':
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, iterations)
fit.train()
rows = []
row = []
row.append("Evaluation Function Value")
row.append(ef.value(rhc.getOptimal()))
rows.append(row)
print "RHC: " + str(ef.value(rhc.getOptimal()))
output2('4Peaks', 'RHC', rows, settings)
rows = []
buildFooter("4Peaks", "RHC", rows, settings),
outputFooter("4Peaks", "RHC", rows, settings)
if alg == 'SA' or alg == 'all':
sa = SimulatedAnnealing(saTemp, saCooling, hcp)
fit = FixedIterationTrainer(sa, iterations)
fit.train()
rows = []
row = []
row.append("Evaluation Function Value")
row.append(ef.value(sa.getOptimal()))
rows.append(row)
print "SA: " + str(ef.value(sa.getOptimal()))
output2('4Peaks', 'SA', rows, settings)
rows = []
buildFooter("4Peaks", "SA", rows, settings)
outputFooter("4Peaks", "SA", rows, settings)
if alg == 'GA' or alg == 'all':
ga = StandardGeneticAlgorithm(gaPop, gaMate, gaMutate, gap)
fit = FixedIterationTrainer(ga, gaIters)
fit.train()
print "GA: " + str(ef.value(ga.getOptimal()))
rows = []
row = []
row.append("Evaluation Function Value")
row.append(ef.value(ga.getOptimal()))
rows.append(row)
output2('4Peaks', 'GA', rows, settings)
rows = []
buildFooter("4Peaks", "GA", rows, settings)
outputFooter("4Peaks", "GA", rows , settings)
if alg == 'MIMIC' or alg == 'all':
mimic = MIMIC(mimicSamples, mimicToKeep, pop)
fit = FixedIterationTrainer(mimic, mimicIters)
fit.train()
print "MIMIC: " + str(ef.value(mimic.getOptimal()))
rows = []
row = []
row.append("Evaluation Function Value")
row.append(ef.value(mimic.getOptimal()))
rows.append(row)
output2('4Peaks', 'MIMIC', rows, settings)
rows = []
buildFooter("4Peaks", "GA", rows, settings)
outputFooter("4Peaks", "MIMIC", rows, settings)
import opt.prob.ProbabilisticOptimizationProblem as ProbabilisticOptimizationProblem
import shared.FixedIterationTrainer as FixedIterationTrainer
import shared.ConvergenceTrainer as ConvergenceTrainer
from array import array
"""
Commandline parameter(s):
none
"""
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
times = ""
print "RHC:"
for x in range(20):
start = time.time()
iterations = (x + 1) * 2500
def run_four_peaks_experiments():
OUTPUT_DIRECTORY = './output'
if not os.path.exists(OUTPUT_DIRECTORY):
os.makedirs(OUTPUT_DIRECTORY)
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
max_iter = 5000
outfile = OUTPUT_DIRECTORY + '/four_peaks_{}_log.csv'
# Randomized Hill Climber
filename = outfile.format('rhc')
with open(filename, 'w') as f:
f.write('iterations,fitness,time\n')
for it in range(0, max_iter, 10):
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(rhc.getOptimal())
data = '{},{},{}\n'.format(it, score, elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# Simulated Annealing
filename = outfile.format('sa')
with open(filename, 'w') as f:
f.write('iteration,cooling_value,fitness,elapsed_time\n')
for cooling_value in (.19, .38, .76, .95):
for it in range(0, max_iter, 10):
sa = SimulatedAnnealing(1E11, cooling_value, hcp)
fit = FixedIterationTrainer(sa, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevalss
score = ef.value(sa.getOptimal())
data = '{},{},{},{}\n'.format(it, cooling_value, score,
elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# Genetic Algorithm
filename = outfile.format('ga')
with open(filename, 'w') as f:
f.write('iteration,population_size,to_mate,to_mutate,fitness,time\n')
for population_size, to_mate, to_mutate in itertools.product(
[200], [25, 50, 75, 100], [10, 20, 30, 40]):
for it in range(0, max_iter, 10):
ga = StandardGeneticAlgorithm(population_size, to_mate, to_mutate,
gap)
fit = FixedIterationTrainer(ga, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(ga.getOptimal())
data = '{},{},{},{},{},{}\n'.format(it, population_size, to_mate,
to_mutate, score, elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
# MIMIC
filename = outfile.format('mm')
with open(filename, 'w') as f:
f.write('iterations,samples,to_keep,fitness,time\n')
for samples, to_keep, m in itertools.product([200], [20],
[0.1, 0.3, 0.5, 0.7, 0.9]):
for it in range(0, 500, 10):
df = DiscreteDependencyTree(m, ranges)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
mm = MIMIC(samples, 20, pop)
fit = FixedIterationTrainer(mm, it)
start_time = time.clock()
fit.train()
elapsed_time = time.clock() - start_time
# fevals = ef.fevals
score = ef.value(mm.getOptimal())
data = '{},{},{},{},{},{}\n'.format(it, samples, to_keep, m, score,
elapsed_time)
print(data)
with open(filename, 'a') as f:
f.write(data)
import opt.prob.MIMIC as MIMIC
import opt.prob.ProbabilisticOptimizationProblem as ProbabilisticOptimizationProblem
import shared.FixedIterationTrainer as FixedIterationTrainer
from array import array
"""
Commandline parameter(s):
none
"""
N = 200
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
iters_list = [100, 500, 1000, 2500, 5000, 7500, 10000, 20000]
print "Random Hill Climbing"
rhc = RandomizedHillClimbing(hcp)
for iters in iters_list:
fit = FixedIterationTrainer(rhc, iters)
def fourpeaksfunc(N, iterations):
rhcMult = 200
saMult = 200
gaMult = 2
mimicMult = 1
optimalOut = []
timeOut = []
evalsOut = []
T = N / 5
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
for niter in iterations:
iterOptimalOut = [N, niter]
iterTimeOut = [N, niter]
iterEvals = [N, niter]
start = time.time()
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, niter * rhcMult)
fit.train()
end = time.time()
rhcOptimal = ef.value(rhc.getOptimal())
rhcTime = end - start
print "RHC optimum: " + str(rhcOptimal)
print "RHC time: " + str(rhcTime)
iterOptimalOut.append(rhcOptimal)
iterTimeOut.append(rhcTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
sa = SimulatedAnnealing(1E20, .8, hcp)
fit = FixedIterationTrainer(sa, niter * saMult)
fit.train()
end = time.time()
saOptimal = ef.value(sa.getOptimal())
saTime = end - start
print "SA optimum: " + str(saOptimal)
print "SA time: " + str(saTime)
iterOptimalOut.append(saOptimal)
iterTimeOut.append(saTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
ga = StandardGeneticAlgorithm(200, 100, 10, gap)
fit = FixedIterationTrainer(ga, niter * gaMult)
fit.train()
end = time.time()
gaOptimal = ef.value(ga.getOptimal())
gaTime = end - start
print "GA optimum: " + str(gaOptimal)
print "GA time: " + str(gaTime)
iterOptimalOut.append(gaOptimal)
iterTimeOut.append(gaTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
start = time.time()
mimic = MIMIC(200, 20, pop)
fit = FixedIterationTrainer(mimic, niter * mimicMult)
fit.train()
end = time.time()
mimicOptimal = ef.value(mimic.getOptimal())
mimicTime = end - start
print "MIMIC optimum: " + str(mimicOptimal)
print "MIMIC time: " + str(mimicTime)
iterOptimalOut.append(mimicOptimal)
iterTimeOut.append(mimicTime)
functionEvals = ef.getNumEvals()
ef.zeroEvals()
iterEvals.append(functionEvals)
optimalOut.append(iterOptimalOut)
timeOut.append(iterTimeOut)
evalsOut.append(iterEvals)
return [optimalOut, timeOut, evalsOut]
def run_algorithm_test(T,
ranges,
algorithms,
output_file_name,
trial_number,
iterations=False):
with open(output_file_name, 'w') as f:
f.write('algorithm,optimal_result,iterations,time,trial\n')
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
for trial in range(trial_number):
if iterations is False:
for item in algorithms:
start_time = time.time()
if item in ['rhc']:
optimal_result, run_iters = run_rhc(hcp, ef)
elif item in ['sa']:
optimal_result, run_iters = run_sa(hcp, ef)
elif item in ['ga']:
optimal_result, run_iters = run_ga(gap, ef)
elif item in ['mimic']:
optimal_result, run_iters = run_mimic(pop, ef)
else:
print "The algorithm type {} is not supported.".format(
item)
end_time = time.time()
time_elapsed = end_time - start_time
run_output = '{},{},{},{},{}\n'.format(item, optimal_result,
run_iters, time_elapsed,
trial)
with open(output_file_name, 'a') as f:
f.write(run_output)
else:
for iter in iterations:
for item in algorithms:
start_time = time.time()
if item in ['rhc']:
optimal_result, run_iters = run_rhc(hcp, ef, iter)
elif item in ['sa']:
optimal_result, run_iters = run_sa(hcp, ef, iter)
elif item in ['ga']:
optimal_result, run_iters = run_ga(gap, ef, iter)
elif item in ['mimic']:
optimal_result, run_iters = run_mimic(pop, ef, iter)
else:
print "The algorithm type {} is not supported.".format(
item)
end_time = time.time()
time_elapsed = end_time - start_time
run_output = '{},{},{},{},{}\n'.format(
item, optimal_result, run_iters, time_elapsed, trial)
with open(output_file_name, 'a') as f:
f.write(run_output)
print "time elapsed is {}".format(time_elapsed)
return
def run_all_2(N=200, T=40, fout=None):
problem = 'fourpeaks'
# N=200
# T=N/10
maxEpochs = 10**6
maxTime = 300 #5 minutes
fill = [2] * N
ranges = array('i', fill)
ef = FourPeaksEvaluationFunction(T)
odd = DiscreteUniformDistribution(ranges)
nf = DiscreteChangeOneNeighbor(ranges)
mf = DiscreteChangeOneMutation(ranges)
# mf = SwapMutation()
cf = SingleCrossOver()
df = DiscreteDependencyTree(.1, ranges)
hcp = GenericHillClimbingProblem(ef, odd, nf)
gap = GenericGeneticAlgorithmProblem(ef, odd, mf, cf)
pop = GenericProbabilisticOptimizationProblem(ef, odd, df)
def run_algo(alg, fit, label, difficulty, iters):
trainTimes = [0.]
trainTime = []
scoreChange = [0.]
stuckCount = 10**3
prev = 0.
for epoch in range(0, maxEpochs, 1):
st = time.clock()
fit.train()
et = time.clock()
trainTimes.append(trainTimes[-1] + (et - st))
trainTime.append((et - st))
rollingMean = 10
avgTime = (math.fsum(trainTime[-rollingMean:]) /
float(rollingMean))
score = ef.value(alg.getOptimal())
# trialString = '{}-{}-{}-{}'.format(label,score,epoch,trainTimes[-1])
trialData = [
problem, difficulty, label, score, epoch, trainTimes[-1],
avgTime, iters
]
# print(trialData)
# fout.writerow(trialData)
# print(trialData)
print(trialData, max(scoreChange))
# print(max(scoreChange))
optimum = (difficulty - 1 - T) + difficulty
if score >= optimum: break
scoreChange.append(abs(score - prev))
prev = score
scoreChange = scoreChange[-stuckCount:]
# print(scoreChange)
if max(scoreChange) == 0: break
if trainTimes[-1] > maxTime: break
# print(trialData)
fout.writerow(trialData)
iters = 1000
rhc = RandomizedHillClimbing(hcp)
fit = FixedIterationTrainer(rhc, iters)
run_algo(rhc, fit, 'RHC', N, iters)
iters = 1000
startTemp = 1E10
coolingFactor = .95
sa = SimulatedAnnealing(startTemp, coolingFactor, hcp)
fit = FixedIterationTrainer(sa, iters)
run_algo(sa, fit, 'SA', N, iters)
iters = 10
population = 300
mates = 100
mutations = 50
ga = StandardGeneticAlgorithm(population, mates, mutations, gap)
fit = FixedIterationTrainer(ga, iters)
run_algo(ga, fit, 'GA', N, iters)
iters = 10
samples = 200
keep = 20
mimic = MIMIC(samples, keep, pop)
fit = FixedIterationTrainer(mimic, iters)
run_algo(mimic, fit, 'MIMIC', N, iters)
