def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tnrs/infer_context.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": {
"ambiguous_names": {
"type": "array",
"items": {
"type": "string"
}
},
"context_name": {
"type": "string"
},
"context_ott_id": {
"type": "integer"
}
},
"required": ["ambiguous_names", "context_name", "context_ott_id"]
}
v2 = copy.deepcopy(current)
_version2schema = compose_schema2version(v2=v2, current=current)
return _version2schema
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/taxonomy/mrca.json",
"type": "object",
"definitions": {},
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": {
"mrca": {
"type": "object"
},
"ott_ids_not_found": {
"type": "array",
"items": {
"type": "integer"
}
}
}
}
v2 = copy.deepcopy(current)
v2['properties']['mrca']['properties'] = taxon_obj_properties('v2')
current['properties']['mrca']['properties'] = taxon_obj_properties('v3')
_version2schema = compose_schema2version(v2=v2, current=current)
return _version2schema
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/taxonomy/about.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": get_taxonomy_about_properties('v3'),
"required": ["author", "name", "source", "version", "weburl"]
}
_version2schema = compose_schema2version(v2=copy.deepcopy(current),
current=current)
return get_version2schema()
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tree_of_life/about.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": get_find_properties_properties('v3'),
"required": ["tree_properties", "study_properties"]
}
v2 = copy.deepcopy(current)
_version2schema = compose_schema2version(v2=v2, current=current)
return get_version2schema()
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/taxonomy/taxon.json",
"type": "object",
"definitions": {},
"$schema": "http://json-schema.org/draft-07/schema#"
}
v2 = copy.deepcopy(current)
v2['properties'] = taxon_obj_properties('v2')
current['properties'] = taxon_obj_properties('v3')
_version2schema = compose_schema2version(v2=v2, current=current)
return _version2schema
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tree_of_life/about.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": get_tree_of_life_mrca_properties('v3'),
"required": ["mrca", "source_id_map"]
}
v2 = copy.deepcopy(current)
p2 = get_tree_of_life_mrca_properties('v2')
v2["properties"] = p2
v2["required"] = list(p2.keys())
_version2schema = compose_schema2version(v2=v2, current=current)
return get_version2schema()
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tnrs/autocomplete_name.json",
"type": "array",
"$schema": "http://json-schema.org/draft-07/schema#",
"items": {
"type": "object"
}
}
v2 = copy.deepcopy(current)
add_taxon_properties(current["items"], 'current')
add_taxon_properties(v2["items"], 'v2')
_version2schema = compose_schema2version(v2=v2, current=current)
return _version2schema
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tree_of_life/about.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": get_tree_of_life_about_properties('v3'),
"required": ["date_created", "num_source_studies", "num_source_trees",
"root", "synth_id", 'taxonomy_version', 'filtered_flags', ]
}
v2 = copy.deepcopy(current)
p2 = get_tree_of_life_about_properties('v2')
v2["properties"] = p2
v2["required"] = list(p2.keys())
_version2schema = compose_schema2version(v2=v2, current=current)
return get_version2schema()
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/taxonomy/subtree.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": {},
}
v2 = copy.deepcopy(current)
n = newick_property('v2')
v2["properties"][n] = {"type": "string"}
v2["required"] = [n]
c = newick_property('current')
current["properties"][c] = {"type": "string"}
current["required"] = [c]
_version2schema = compose_schema2version(v2=v2, current=current)
return _version2schema
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tree_of_life/about.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": {
"newick": {
"type": "string"
},
},
"required": ["newick"]
}
v2 = copy.deepcopy(current)
p2 = v2["properties"]
p2["tree_id"] = {"type": "string"}
v2["required"] = list(p2.keys())
_version2schema = compose_schema2version(v2=v2, current=current)
return get_version2schema()
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id": SCHEMA_URL_PREF + "current/tnrs/infer_context.json",
"type": "object",
"$schema": "http://json-schema.org/draft-07/schema#",
"properties": {
"context": {
"type": "string"
},
"governing_code": {
"type": "string"
},
"includes_approximate_matches": {
"type": "boolean"
},
"includes_deprecated_taxa": {
"type": "boolean"
},
"includes_suppressed_names": {
"type": "boolean"
},
'matched_names': {
"type": "array",
"items": {
"type": "string"
}
},
"results": {
"type": "array",
},
"unambiguous_names": {
"type": "array",
"items": {
"type": "string"
}
},
"unmatched_names": {
"type": "array",
"items": {
"type": "string"
}
}
}
}
v2 = copy.deepcopy(current)
v2p = v2['properties']
for newer, older in [
('unambiguous_names', 'unambiguous_name_ids'),
('unmatched_names', 'unmatched_name_ids'),
('matched_names', 'matched_name_ids'),
('includes_suppressed_names', 'includes_dubious_names'),
]:
v2p[older] = v2p[newer]
del v2p[newer]
# noinspection PyTypeChecker
v2['properties']['results']["items"] = get_match_names_results_objects(
'v2')
# noinspection PyTypeChecker
current['properties']['results'][
"items"] = get_match_names_results_objects('v3')
v2['properties']['taxonomy'] = get_taxonomy_about_properties('v2')
current['properties']['taxonomy'] = get_taxonomy_about_properties('v3')
v2['required'] = list(v2['properties'].keys())
current['required'] = list(current['properties'].keys())
_version2schema = compose_schema2version(v2=v2, current=current)
return _version2schema
def get_version2schema():
global _version2schema
if _version2schema is not None:
return _version2schema
current = {
"$id":
SCHEMA_URL_PREF + "current/taxonomy/flags.json",
"type":
"object",
"$schema":
"http://json-schema.org/draft-07/schema#",
"properties": {
"barren": {
"type": "integer"
},
"edited": {
"type": "integer"
},
"environmental": {
"type": "integer"
},
"environmental_inherited": {
"type": "integer"
},
"extinct": {
"type": "integer"
},
"extinct_direct": {
"type": "integer"
},
"extinct_inherited": {
"type": "integer"
},
"forced_visible": {
"type": "integer"
},
"hidden": {
"type": "integer"
},
"hidden_inherited": {
"type": "integer"
},
"hybrid": {
"type": "integer"
},
"incertae_sedis": {
"type": "integer"
},
"incertae_sedis_direct": {
"type": "integer"
},
"incertae_sedis_inherited": {
"type": "integer"
},
"inconsistent": {
"type": "integer"
},
"infraspecific": {
"type": "integer"
},
"major_rank_conflict": {
"type": "integer"
},
"major_rank_conflict_direct": {
"type": "integer"
},
"major_rank_conflict_inherited": {
"type": "integer"
},
"merged": {
"type": "integer"
},
"not_otu": {
"type": "integer"
},
"sibling_higher": {
"type": "integer"
},
"sibling_lower": {
"type": "integer"
},
"tattered": {
"type": "integer"
},
"tattered_inherited": {
"type": "integer"
},
"unclassified": {
"type": "integer"
},
"unclassified_direct": {
"type": "integer"
},
"unclassified_inherited": {
"type": "integer"
},
"unplaced": {
"type": "integer"
},
"unplaced_inherited": {
"type": "integer"
},
"viral": {
"type": "integer"
},
"was_container": {
"type": "integer"
}
},
"required": [
'barren', 'edited', 'environmental', 'environmental_inherited',
'extinct', 'extinct_direct', 'extinct_inherited', 'forced_visible',
'hidden', 'hidden_inherited', 'hybrid', 'incertae_sedis',
'incertae_sedis_direct', 'incertae_sedis_inherited',
'inconsistent', 'infraspecific', 'major_rank_conflict',
'major_rank_conflict_direct', 'major_rank_conflict_inherited',
'merged', 'not_otu', 'sibling_higher', 'sibling_lower', 'tattered',
'tattered_inherited', 'unclassified', 'unclassified_direct',
'unclassified_inherited', 'unplaced', 'unplaced_inherited',
'viral', 'was_container'
]
}
_version2schema = compose_schema2version(v2=copy.deepcopy(current),
current=current)
return get_version2schema()