Пример #1
0
    def __classification_to_annotations__(self,classification,):
        """
        This is the main function projects will have to override - given a set of annotations, we need to return the list
        of all markings in that annotation
        """
        (lb_roi,ub_roi) = self.current_roi
        markings = []
        for ann in classification["annotations"]:
            if "finished_at" in ann:
                break
            x_pts=[]
            y_pts=[]
            for point in ["p0","p1","p2","p3"]:
                x_pts.append(float(ann[point][0]))
                y_pts.append(float(ann[point][1]))

            x = numpy.mean(x_pts)
            y = numpy.mean(y_pts)

            if not(MarkingProject.__in_roi__(self,(x,y),lb_roi,ub_roi)):
                continue

            try:
                species = ann["species"]
            except KeyError:
                continue

            if species == "":
                continue
            markings.append(((x,y),species))

        # assert False
        return markings
Пример #2
0
    def __classification_to_annotations__(
        self,
        classification,
    ):
        """
        This is the main function projects will have to override - given a set of annotations, we need to return the list
        of all markings in that annotation
        """
        (lb_roi, ub_roi) = self.current_roi
        markings = []
        for ann in classification["annotations"]:
            if "finished_at" in ann:
                break
            x_pts = []
            y_pts = []
            for point in ["p0", "p1", "p2", "p3"]:
                x_pts.append(float(ann[point][0]))
                y_pts.append(float(ann[point][1]))

            x = numpy.mean(x_pts)
            y = numpy.mean(y_pts)

            if not (MarkingProject.__in_roi__(self, (x, y), lb_roi, ub_roi)):
                continue

            try:
                species = ann["species"]
            except KeyError:
                continue

            if species == "":
                continue
            markings.append(((x, y), species))

        # assert False
        return markings
Пример #3
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 def __init__(self, date="2015-05-06"):
     MarkingProject.__init__(self, "plankton", date, experts=["yshish"])
Пример #4
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 def __init__(self,date="2015-05-08",pickle_directory="/tmp/"):
     MarkingProject.__init__(self, "plankton", date,experts=["yshish"],pickle_directory=pickle_directory)
Пример #5
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 def __init__(self,date="2015-05-06"):
     MarkingProject.__init__(self, "plankton", date,experts=["yshish"])