def should_import_epoch_per_file(self):
"""
Should import files as URLResponses, not as Resources
"""
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
sessionType = xnatSession.datatype()
sessionScanner = xnatSession.attrs.get(sessionType + '/scanner')
for scanID in xnatSession.scans().get():
s = xnatSession.scan(scanID)
id = s.attrs.get('xnat:mrScanData/type')
g = exp.getEpochGroupsWithLabel(id).iterator().next()
for r in s.resources():
label = r.label()
typeGroup = g.getChildren(label)[0]
self.assertEqual(typeGroup.getEpochCount(), len(r.files()))
for epoch in typeGroup.getEpochs():
self.assertEqual(len(epoch.getResponseNames()), 1)
r = epoch.getResponse(sessionScanner)
self.assertIsNotNone(r)
def should_import_epoch_per_file(self):
"""
Should import files as URLResponses, not as Resources
"""
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
sessionType = xnatSession.datatype()
sessionScanner = xnatSession.attrs.get(sessionType + '/scanner')
for scanID in xnatSession.scans().get():
s = xnatSession.scan(scanID)
id = s.attrs.get('xnat:mrScanData/type')
g = exp.getEpochGroupsWithLabel(id).iterator().next()
for r in s.resources():
label = r.label()
typeGroup = g.getChildren(label)[0]
self.assertEqual(typeGroup.getEpochCount(), len(r.files()))
for epoch in typeGroup.getEpochs():
self.assertEqual(len(epoch.getResponseNames()), 1)
r = epoch.getResponse(sessionScanner)
self.assertIsNotNone(r)
def should_import_epochgroup_per_scan_with_scantype_as_label(self):
ctx = self.dsc.getContext()
project = ctx.insertProject('session_import', 'session_import', api.datetime())
src = ctx.insertSource('test')
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
self.assertGreaterEqual(xnatSession.scans().get(), 1)
self.assertEqual(len(exp.getEpochGroups()), len(xnatSession.scans().get()))
def should_import_scan_parameters_as_epoch_parameters(self):
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
sessionType = xnatSession.datatype()
sessionScanner = xnatSession.attrs.get(sessionType + '/scanner')
for epoch in exp.getEpochsIterable().iterator():
parameters = epoch.getProtocolParameters()
self.assertGreater(parameters.size(), 0)
def should_import_epochgroup_per_scan_with_scantype_as_label(self):
ctx = self.dsc.getContext()
project = ctx.insertProject('session_import', 'session_import',
api.datetime())
src = ctx.insertSource('test')
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
self.assertGreaterEqual(xnatSession.scans().get(), 1)
self.assertEqual(len(exp.getEpochGroups()),
len(xnatSession.scans().get()))
def should_set_scan_datatype(self):
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
for g in exp.getEpochGroups():
scanID = xnatSession.scans().get()[0]
dtype = xnatSession.scan(scanID).datatype()
self.assertEqual(g.getOwnerProperty(DATATYPE_PROPERTY), dtype)
def should_import_scan_parameters_as_epoch_parameters(self):
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
sessionType = xnatSession.datatype()
sessionScanner = xnatSession.attrs.get(sessionType + '/scanner')
for epoch in exp.getEpochsIterable().iterator():
parameters = epoch.getProtocolParameters()
self.assertGreater(parameters.size(), 0)
def should_set_session_id_as_epochgroup_label(self):
ctx = self.dsc.getContext()
project = ctx.insertProject('session_import', 'session_import', api.datetime())
src = ctx.insertSource('test')
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
for scanID in xnatSession.scans().get():
scan = xnatSession.scan(scanID)
id = scan.attrs.get('xnat:mrScanData/type')
self.assertEqual(len(list(exp.getEpochGroupsWithLabel(id).iterator())), 1)
def should_set_scan_datatype(self):
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
for g in exp.getEpochGroups():
scanID = xnatSession.scans().get()[0]
dtype = xnatSession.scan(scanID).datatype()
self.assertEqual(g.getOwnerProperty(DATATYPE_PROPERTY), dtype)
def should_set_session_id_as_epochgroup_label(self):
ctx = self.dsc.getContext()
project = ctx.insertProject('session_import', 'session_import',
api.datetime())
src = ctx.insertSource('test')
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
for scanID in xnatSession.scans().get():
scan = xnatSession.scan(scanID)
id = scan.attrs.get('xnat:mrScanData/type')
self.assertEqual(
len(list(exp.getEpochGroupsWithLabel(id).iterator())), 1)
def should_import_scanner_perameters_as_device_parameters(self):
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
sessionType = xnatSession.datatype()
sessionScanner = xnatSession.attrs.get(sessionType + '/scanner')
for epoch in exp.getEpochsIterable().iterator():
r = epoch.getResponse(sessionScanner)
self.assertIsNotNone(r)
parameters = r.getDeviceParameters()
self.assertIsNotNone(parameters)
self.assertGreater(parameters.size(), 0)
def should_import_scanner_perameters_as_device_parameters(self):
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
sessionType = xnatSession.datatype()
sessionScanner = xnatSession.attrs.get(sessionType + '/scanner')
for epoch in exp.getEpochsIterable().iterator():
r = epoch.getResponse(sessionScanner)
self.assertIsNotNone(r)
parameters = r.getDeviceParameters()
self.assertIsNotNone(parameters)
self.assertGreater(parameters.size(), 0)
def should_insert_epochgroup_per_resource_group(self):
"""
Should import files as URLResponses, not as Resources
"""
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
for scanID in xnatSession.scans().get():
s = xnatSession.scan(scanID)
id = s.attrs.get('xnat:mrScanData/type')
g = exp.getEpochGroupsWithLabel(id).iterator().next()
for r in s.resources():
label = r.label()
self.assertEqual(len(g.getChildren(label)), 1)
def should_insert_epochgroup_per_resource_group(self):
"""
Should import files as URLResponses, not as Resources
"""
ctx = self.dsc.getContext()
src = ctx.insertSource('test')
project = ctx.insertProject('test', 'test', api.datetime())
xnatSession = session_mock()
exp = import_session(self.dsc, src, project, xnatSession)
for scanID in xnatSession.scans().get():
s = xnatSession.scan(scanID)
id = s.attrs.get('xnat:mrScanData/type')
g = exp.getEpochGroupsWithLabel(id).iterator().next()
for r in s.resources():
label = r.label()
self.assertEqual(len(g.getChildren(label)), 1)