def should_import_epochs(self):
expt2 = self.ctx.insertProject("project2","project2",DateTime()).insertExperiment("purpose", DateTime())
protocol2 = self.ctx.insertProtocol("protocol", "description")
epoch_start = DateTime()
epoch = expt2.insertEpoch(Maps.newHashMap(),
Maps.newHashMap(),
epoch_start,
DateTime(),
protocol2,
to_map({}),
to_map({}))
segment = self.block.segments[0]
neoepoch = neo.core.epoch.Epoch(10 * pq.ms, 100 * pq.ms, "epoch1")
segment.epochs.append(neoepoch)
try:
import_timeline_annotations(epoch, segment, epoch_start)
annotations = list(iterable(epoch.getUserTimelineAnnotations(self.ctx.getAuthenticatedUser())))
assert_equals(1, len(annotations))
assert_equals(epoch_start.plusMillis(10).getMillis(), annotations[0].getStart().getMillis())
assert_equals(epoch_start.plusMillis(10).plusMillis(100).getMillis(), annotations[0].getEnd().get().getMillis())
finally:
segment.epochs.remove(neoepoch)
def should_import_events(self):
expt2 = self.ctx.insertProject("project2","project2",DateTime()).insertExperiment("purpose", DateTime())
protocol2 = self.ctx.insertProtocol("protocol", "description")
epoch_start = DateTime()
epoch = expt2.insertEpoch(Maps.newHashMap(),
Maps.newHashMap(),
epoch_start,
DateTime(),
protocol2,
to_map(dict()),
to_map(dict()))
segment = self.block.segments[0]
event_ms = 10
event1 = Event(event_ms * pq.ms, "event1", name = "event1")
segment.events.append(event1)
try:
import_timeline_annotations(epoch, segment, epoch_start)
annotations = list(iterable(epoch.getUserTimelineAnnotations(self.ctx.getAuthenticatedUser())))
assert(epoch_start.plusMillis(event_ms).equals(annotations[0].getStart()))
assert_equals(1, len(annotations))
finally:
segment.events.remove(event1)
def should_import_event_arrays(self):
expt2 = self.ctx.insertProject("project2","project2",DateTime()).insertExperiment("purpose", DateTime())
protocol2 = self.ctx.insertProtocol("protocol", "description")
epoch_start = DateTime()
epoch = expt2.insertEpoch(Maps.newHashMap(),
Maps.newHashMap(),
epoch_start,
DateTime(),
protocol2,
to_map({}),
to_map({}))
segment = self.block.segments[0]
event_ms = [10, 12]
event_array = EventArray(times=np.array(event_ms) * pq.ms, labels=['event1', 'event2'])
segment.eventarrays.append(event_array)
try:
import_timeline_annotations(epoch, segment, epoch_start)
annotations = list(iterable(epoch.getUserTimelineAnnotations(self.ctx.getAuthenticatedUser())))
assert_equals(2, len(annotations))
event_starts = [a.getStart() for a in annotations]
for ms in event_ms:
found = False
for s in event_starts:
if epoch_start.plusMillis(ms).equals(s):
found = True
if not found:
assert_true(False, "event start time doesn't match")
finally:
segment.eventarrays.remove(event_array)