def validate_run(self, log, info, exit_code, stdout):
check_exitcode(log,exit_code)
respiv = pso.concat_all_MHC_outputs(self.outfiles, self.df)
imageloc = os.path.join(info[Keys.WORKDIR], 'heatmap.png')
self.plot_heatmap(respiv, imageloc)
info['NETMHC_OUT'] = os.path.join(info[Keys.WORKDIR], 'netmhccons.output.tsvh')
respiv.to_csv(info ['NETMHC_OUT'], sep="\t")
# get all the generated outptuts
return info
def validate_run(self, log, info, exit_code, stdout):
check_exitcode(log, exit_code)
folders = map(os.path.dirname, self.outfiles)
ufold = list(set(folders))
info['NETMHC_OUT'] = []
for fold in ufold:
files = [x for x in self.outfiles if os.path.dirname(x) in fold]
respiv = pso.concat_all_MHC_outputs(files, self.iprophet)
outfile = os.path.join(fold, 'netmhccons.output.csv')
respiv.to_csv(outfile, sep="\t")
info['NETMHC_OUT'] += outfile
return info
