def __init__(self):
# Creating logger for eman class
self.logger = logging.getLogger('ss.eman')
logger = self.logger
# Starting new logging sessions
logger.info('-' * 50)
logger.info('Starting new logging session %s' % \
datetime.datetime.now().__str__())
# Create Logging directory if it does not exist
logger.info('Checking if logs/ already exists')
if not os.path.exists(logdir):
logger.info('Could not find logs/ Creating...')
os.mkdir(logdir)
# Initialize ParserManager
logger.info('Initializing parsermanager')
self.pman = ParserManager()
# A schedule of scenarios to run
logger.debug('Current Scenario schedule : ')
self.schedule = [(self.run_scenario1, "Chou2006 experiments"),
(self.run_scenario2, "ss_5genes1 experiments")]
logger.debug([t[1] for t in self.schedule])
ss_copy.experiments = [exp]
yield ss_copy
class ARParams(object):
""" This object stores the AR params currently in use"""
def __init__(self, Cp, Cd, Lp, Ld, b, h, g, a, bd, bp, slopes):
self.Cp = Cp
self.Cd = Cd
self.Lp = Lp
self.Ld = Ld
self.b = b
self.h = h
self.g = g
self.a = a
self.bd = bd
self.bp = bp
self.slopes = slopes
if __name__ == '__main__':
pman = ParserManager()
for ii, ss in enumerate(pman.get_gen_chou2006()):
# Run Alternating Regression and the result
# Extract each individual ss and execute it
for expid, ss_exp in enumerate(_exp_splayer(ss)):
print("Running ss: %s mod: %d exp: %d" % (ss.name, ii, expid))
ar = ARSolver(ss_exp)
result_exp = ar.solve(save_trace=True, maxiter=10000, tol=10e-5)
#result_exp = ar.solve()
