def setUpTestFile(self, name):
sess = self.root.sf
filename = self.OmeroPy / ".." / ".." / ".." / "components" / "common" / "test" / name
dataDir = path(sess.getConfigService().getConfigValue("omero.data.dir"));
self.tmp_dir = dataDir / self.uuid()
self.repo_filename = self.tmp_dir / name
# Copy file into repository subdirectory
path.mkdir(self.tmp_dir)
shutil.copyfile(filename, self.repo_filename)
# Import the same file
self.pix_id = long(self.import_image(filename)[0])
self.rp = self.client.sf.createRawPixelsStore()
self.rp.setPixelsId(self.pix_id, True)
### This line will deprecated on API unification.
pixels = self.client.sf.createGateway().getPixels(self.pix_id)
self.sizeX = pixels.getSizeX().getValue()
self.sizeY = pixels.getSizeY().getValue()
self.sizeZ = pixels.getSizeZ().getValue()
self.sizeC = pixels.getSizeC().getValue()
self.sizeT = pixels.getSizeT().getValue()
# Get repository and the bf pixels store on the copied file
repoMap = sess.sharedResources().repositories()
for r in range(len(repoMap.descriptions)):
if repoMap.descriptions[r].name.val == dataDir.parent.name:
repoIndex = r
repoPrx = repoMap.proxies[repoIndex]
self.bf = repoPrx.pixels(self.repo_filename)
def setUpTestFile(self, name):
sess = self.root.sf
filename = self.OmeroPy / ".." / ".." / ".." / "components" / "common" / "test" / name
dataDir = path(sess.getConfigService().getConfigValue("omero.data.dir"));
self.tmp_dir = dataDir / self.uuid()
self.repo_filename = self.tmp_dir / name
# Copy file into repository subdirectory
path.mkdir(self.tmp_dir)
shutil.copyfile(filename, self.repo_filename)
# Get repository and the bf pixels store on the copied file
repoMap = sess.sharedResources().repositories()
for r in range(len(repoMap.descriptions)):
if repoMap.descriptions[r].name.val == dataDir.parent.name:
repoIndex = r
repoPrx = repoMap.proxies[repoIndex]
self.bf = repoPrx.pixels(self.repo_filename)
byteWidth = self.bf.getByteWidth()
rowSize = self.bf.getRowSize()
planeSize = self.bf.getPlaneSize()
stackSize = self.bf.getStackSize()
timepointSize = self.bf.getTimepointSize()
totalSize = self.bf.getTotalSize()
self.sizeX = rowSize/byteWidth
self.sizeY = planeSize/rowSize
self.sizeZ = stackSize/planeSize
self.sizeC = timepointSize/stackSize
self.sizeT = totalSize/timepointSize
def setUpTestFile(self, name):
sess = self.root.sf
filename = self.OmeroPy / ".." / ".." / ".." / "components" / "common" / "test" / name
dataDir = path(
sess.getConfigService().getConfigValue("omero.data.dir"))
self.tmp_dir = dataDir / self.uuid()
self.repo_filename = self.tmp_dir / name
# Copy file into repository subdirectory
path.mkdir(self.tmp_dir)
shutil.copyfile(filename, self.repo_filename)
# Get repository and the bf pixels store on the copied file
repoMap = sess.sharedResources().repositories()
for r in range(len(repoMap.descriptions)):
if repoMap.descriptions[r].name.val == dataDir.parent.name:
repoIndex = r
repoPrx = repoMap.proxies[repoIndex]
self.bf = repoPrx.pixels(self.repo_filename)
byteWidth = self.bf.getByteWidth()
rowSize = self.bf.getRowSize()
planeSize = self.bf.getPlaneSize()
stackSize = self.bf.getStackSize()
timepointSize = self.bf.getTimepointSize()
totalSize = self.bf.getTotalSize()
self.sizeX = rowSize / byteWidth
self.sizeY = planeSize / rowSize
self.sizeZ = stackSize / planeSize
self.sizeC = timepointSize / stackSize
self.sizeT = totalSize / timepointSize
def __init__(self, sugaractivity, handle, rsrc, base="/nfs/show"):
GObject.GObject.__init__(self)
self.__handle = handle
if self.__handle.object_id is None:
print 'slideshow - from home view'
else:
obj = datastore.get(self.__handle.object_id)
print 'object:', obj.get_file_path()
self.__logger = logging.getLogger('Deck')
self.__base = base
self.__rsrc = rsrc
self.__activity = sugaractivity
self.__is_initiating = True
self.__nav_locked = False
self.__active_sub = -1
self.__self_text = ""
self.__text_tag = None
self.__xmlpath = os.path.join(base, "deck.xml")
# we always create a new presentation and copy over it on resume
if path(base).exists():
# we can't have permissions.info for this to work
subprocess.call("cp -r " + base + " " +
os.path.expanduser("~/save"),
shell=True)
subprocess.call("rm -rf " + base + '/*', shell=True)
else:
path.mkdir(base)
path.copy(self.__rsrc / 'deck.xml', base / 'deck.xml')
path.copy(self.__rsrc / 'title.html', base / 'title.html')
path.copy(self.__rsrc / 'title_thumb.png', base / 'title_thumb.png')
self.reload()
self.set_title('New')
def setUpTestFile(self, name):
sess = self.root.sf
filename = self.OmeroPy / ".." / ".." / ".." / "components" / "common" / "test" / name
dataDir = path(sess.getConfigService().getConfigValue("omero.data.dir"));
self.tmp_dir = dataDir / self.uuid()
self.repo_filename = self.tmp_dir / name
# Copy file into repository subdirectory
path.mkdir(self.tmp_dir)
shutil.copyfile(filename, self.repo_filename)
# Import the same file
self.pix_id = long(self.import_image(filename)[0])
self.rp = self.client.sf.createRawPixelsStore()
self.rp.setPixelsId(self.pix_id, True)
### This line will deprecated on API unification.
pixels = self.client.sf.createGateway().getPixels(self.pix_id)
self.sizeX = pixels.getSizeX().getValue()
self.sizeY = pixels.getSizeY().getValue()
self.sizeZ = pixels.getSizeZ().getValue()
self.sizeC = pixels.getSizeC().getValue()
self.sizeT = pixels.getSizeT().getValue()
# Get repository and the bf pixels store on the copied file
repoMap = sess.sharedResources().repositories()
for r in range(len(repoMap.descriptions)):
if repoMap.descriptions[r].name.val == dataDir.parent.name:
repoIndex = r
repoPrx = repoMap.proxies[repoIndex]
self.bf = repoPrx.pixels(self.repo_filename)
from path import path
import os
if __name__ == '__main__':
path.mkdir('./test') #error si dossier existe deja
fichier = open("test/fichier.txt", "a")
fichier.write("pierrus le pgm")
fichier = open("test/fichier.txt", "r")
contenu = fichier.read()
print(contenu)
