def test_create_app_missing_requirement(mock_app):
"""Tests the function that creates the app when phenotype_annotation.tab.txt and hp.obo.txt
resources are missing"""
# GIVEN one of the required files missing / it's been renamed
temp_file = ".".join([path_to_hpo_terms, "temp"])
os.rename(path_to_hpo_terms, temp_file)
# THEN the app should not be created
app = create_app()
assert app is None
# Revert original resource name
os.rename(temp_file, path_to_hpo_terms)
def test_create_app():
"""Tests the function that creates the app"""
assert create_app()
from werkzeug.contrib.fixers import ProxyFix from patientMatcher.server import create_app app = create_app() app.wsgi_app = ProxyFix(app.wsgi_app)
def mock_app(database, pymongo_client):
app = create_app()
app.db = database
app.client = pymongo_client
return app