def create_rois(self):
# Delete pre-existing ROIs (except those which are manually contoured) in sorted order:
group = self.grouped_rois()
for key in sorted(iter(group)):
for roi in group[key]:
PMF.delete_matching_roi_except_manually_contoured(
self.pm, self.ss, roi)
group = self.grouped_rois()
# Create ROIs (in reverse sorted order):
for key in reversed(sorted(iter(group))):
for roi in group[key]:
# Only create ROI if it doesn't already exist:
if not PMF.has_roi(self.pm, roi.name):
if roi.__class__.__name__ == 'ROI':
if roi.model:
PMF.create_model_roi(self.pm, self.examination,
roi)
else:
PMF.create_empty_roi(self.pm, roi)
elif roi.__class__.__name__ == 'ROIExpanded':
PMF.create_expanded_roi(self.pm, self.examination,
self.ss, roi)
elif roi.__class__.__name__ == 'ROIAlgebra':
PMF.create_algebra_roi(self.pm, self.examination,
self.ss, roi)
elif roi.__class__.__name__ == 'ROIWall':
PMF.create_wall_roi(self.pm, self.examination, self.ss,
roi)
def site(pm, examination, ss, plan, prescription, region_code, target,
technique_name):
if region_code in RC.brain_codes:
# Brain:
if region_code not in RC.brain_whole_codes:
if prescription.nr_fractions > 5:
PMF.create_retina_and_cornea(pm, examination, ss, ROIS.lens_l,
ROIS.box_l, ROIS.eye_l,
ROIS.retina_l, ROIS.cornea_l)
PMF.create_retina_and_cornea(pm, examination, ss, ROIS.lens_r,
ROIS.box_r, ROIS.eye_r,
ROIS.retina_r, ROIS.cornea_r)
site = brain(pm, examination, ss, plan, prescription, region_code)
elif region_code in RC.breast_codes:
# Breast:
if region_code in RC.breast_not_thorax_codes:
# Create a "Markers" ROI:
breast_target = SSF.determine_breast_primary_target(ss)
PMF.create_grey_value_intersection_roi(pm, examination, ss,
ROIS.temp_markers,
breast_target, ROIS.markers,
250, 2500)
if PMF.has_roi(pm, ROIS.markers.name):
pm.RegionsOfInterest[
ROIS.markers.name].OrganData.OrganType = 'Other'
site = breast(ss, plan, prescription, region_code, technique_name,
target)
elif region_code in RC.lung_and_mediastinum_codes:
# Lung:
site = lung(ss, plan, prescription, region_code, target)
elif region_code in RC.prostate_codes:
# Prostate:
if prescription.total_dose > 50:
PMF.create_bottom_part_x_cm(pm, examination, ss, ROIS.rectum,
ROIS.anal_canal, 4)
site = prostate(ss, plan, prescription, region_code, target)
elif region_code in RC.rectum_codes:
# Rectum:
site = rectum(ss, plan, prescription)
elif region_code in RC.bladder_codes:
# Bladder:
site = bladder(ss, plan, prescription)
elif region_code in RC.palliative_codes:
# Palliative:
if prescription.is_stereotactic():
site = bone_stereotactic(ss, plan, prescription, region_code)
else:
site = palliative(ss, plan, prescription, region_code, target)
return site
PMF.create_posterior_half(pm, examination, ss, ROIS.rectum, ROIS.dorso_rectum)
if selected_oar_list.get(ROIS.cornea_l) and selected_oar_list.get(ROIS.retina_l):
PMF.create_retina_and_cornea(pm, examination, ss, ROIS.lens_l, ROIS.box_l, ROIS.eye_l, ROIS.retina_l, ROIS.cornea_l)
elif selected_oar_list.get(ROIS.retina_l) and not selected_oar_list.get(ROIS.cornea_l):
PMF.create_retina(pm, examination, ss, ROIS.lens_l, ROIS.box_l, ROIS.eye_l, ROIS.retina_l)
elif selected_oar_list.get(ROIS.cornea_l) and not selected_oar_list.get(ROIS.retina_l):
PMF.create_cornea(pm, examination, ss, ROIS.lens_l, ROIS.box_l, ROIS.eye_l, ROIS.cornea_l)
if selected_oar_list.get(ROIS.cornea_r) and selected_oar_list.get(ROIS.retina_r):
PMF.create_retina_and_cornea(pm, examination, ss, ROIS.lens_r, ROIS.box_r, ROIS.eye_r, ROIS.retina_r, ROIS.cornea_r)
elif selected_oar_list.get(ROIS.retina_r) and not selected_oar_list.get(ROIS.cornea_r):
PMF.create_retina(pm, examination, ss, ROIS.lens_r, ROIS.box_r, ROIS.eye_r, ROIS.retina_r)
elif selected_oar_list.get(ROIS.cornea_r) and not selected_oar_list.get(ROIS.retina_r):
PMF.create_cornea(pm, examination, ss, ROIS.lens_r, ROIS.box_r, ROIS.eye_r, ROIS.cornea_r)
# Create ROIs:
for roi in reversed(list(selected_oar_list)):
# Only create ROI if it doesn't already exist:
if not PMF.has_roi(pm, roi.name):
if roi.__class__.__name__ == 'ROI':
if roi.model:
PMF.create_model_roi(pm, examination, roi)
else:
PMF.create_empty_roi(pm, roi)
elif roi.__class__.__name__ == 'ROIExpanded':
PMF.create_expanded_roi(pm, examination, ss, roi)
elif roi.__class__.__name__ == 'ROIAlgebra':
PMF.create_algebra_roi(pm, examination, ss, roi)
elif roi.__class__.__name__ == 'ROIWall':
PMF.create_wall_roi(pm, examination, ss, roi)