def test_complement(self):
assert_equal(self.sequence,
sequence.complement(self.complement))
assert_equal(self.complement,
sequence.complement(self.sequence))
assert_equal(self.reverse,
sequence.complement(self.reverse_complement))
def test_complement_error(self):
sequence.complement(self.bad_sequence)
def test_iupac(self):
assert_equal(self.iupac_complement,
sequence.complement(self.iupac_sequence))
assert_equal(self.iupac_reverse_complement,
sequence.reverseComplement(self.iupac_sequence))
def test_complement_error(self):
sequence.complement(self.bad_sequence)
def test_iupac(self):
assert_equal(self.iupac_complement,
sequence.complement(self.iupac_sequence))
assert_equal(self.iupac_reverse_complement,
sequence.reverseComplement(self.iupac_sequence))
def test_complement(self):
assert_equal(self.sequence, sequence.complement(self.complement))
assert_equal(self.complement, sequence.complement(self.sequence))
assert_equal(self.reverse,
sequence.complement(self.reverse_complement))
def test_complement_error(self):
with pytest.raises(ValueError):
sequence.complement(self.BAD_SEQUENCE)
def test_iupac(self):
assert self.IUPAC_COMPLEMENT == sequence.complement(
self.IUPAC_SEQUENCE)
assert self.IUPAC_REVERSE_COMPLEMENT == sequence.reverseComplement(
self.IUPAC_SEQUENCE)
def test_complement(self):
assert self.SEQUENCE == sequence.complement(self.COMPLEMENT)
assert self.COMPLEMENT == sequence.complement(self.SEQUENCE)
assert self.REVERSE == sequence.complement(self.REVERSE_COMPLEMENT)
