def test_reverse(self):
assert_equal(self.sequence,
sequence.reverse(sequence.reverse(self.sequence)))
assert_equal(self.reverse,
sequence.reverse(self.sequence))
assert_equal(self.complement,
sequence.reverse(self.reverse_complement))
def reverseComplement(self, preserveHeader=False):
"""
Return a new FastaRecord with the reverse-complemented DNA sequence.
Optionally, supply a name
"""
rcSequence = sequence.reverseComplement(self.sequence)
rcQuality = sequence.reverse(self.quality)
if preserveHeader:
return FastqRecord(self.header, rcSequence, rcQuality)
else:
rcName = '{0} [revcomp]'.format(self.header.strip())
return FastqRecord(rcName, rcSequence, rcQuality)
def reverseComplement(self, preserveHeader=False):
"""
Return a new FastaRecord with the reverse-complemented DNA sequence.
Optionally, supply a name
"""
rcSequence = sequence.reverseComplement(self.sequence)
rcQuality = sequence.reverse(self.quality)
if preserveHeader:
return FastqRecord(self.header, rcSequence, rcQuality)
else:
rcName = '{0} [revcomp]'.format(self.header.strip())
return FastqRecord(rcName, rcSequence, rcQuality)
def test_reverse(self):
assert_equal(self.sequence,
sequence.reverse(sequence.reverse(self.sequence)))
assert_equal(self.reverse, sequence.reverse(self.sequence))
assert_equal(self.complement,
sequence.reverse(self.reverse_complement))
def test_reverse(self):
assert self.SEQUENCE == sequence.reverse(
sequence.reverse(self.SEQUENCE))
assert self.REVERSE == sequence.reverse(self.SEQUENCE)
assert self.COMPLEMENT == sequence.reverse(self.REVERSE_COMPLEMENT)