def args_runner(args): import pbsmrtpipe.loader as L rtasks = L.load_all_tool_contracts() return registry_runner(registry, rtasks, args.output_dir, emit_xml=args.with_xml)
def test_sanity_dynamic_task_loading(self): import pbsmrtpipe.loader as D meta_tasks = D.load_all_tool_contracts() for meta_task in meta_tasks.values(): log.debug("\n" + meta_task.summary()) self.assertIsNotNone(meta_tasks)
def test_load_static_tasks(self): import pbsmrtpipe.loader as L static_meta_tasks = L.load_all_tool_contracts() log.debug("Static Meta Tasks") log.debug(static_meta_tasks) self.assertIsNotNone(static_meta_tasks) self.assertTrue(len(static_meta_tasks) > 0)
def test_load_static_tasks(self): import pbsmrtpipe.loader as L static_meta_tasks = L.load_all_tool_contracts() log.debug("Static Meta Tasks") log.debug(static_meta_tasks) self.assertIsNotNone(static_meta_tasks) self.assertTrue(len(static_meta_tasks) > 0)
def main(argv): base_path = op.dirname(__file__) dest_path = op.join(base_path, "resolved-pipeline-templates") os.environ["PB_TOOL_CONTRACT_DIR"] = op.join(base_path, "registered-tool-contracts") rtasks_d = load_all_tool_contracts() pts = load_all_installed_pipelines() write_pipeline_templates_to_json(pts.values(), rtasks_d, dest_path) return 0
def main(argv): base_path = op.dirname(__file__) dest_path = op.join(base_path, "resolved-pipeline-templates") os.environ["PB_TOOL_CONTRACT_DIR"] = op.join(base_path, "registered-tool-contracts") rtasks_d = load_all_tool_contracts() pts = load_all_installed_pipelines() write_pipeline_templates_to_json(pts.values(), rtasks_d, dest_path) return 0
def args_runner(args): rtasks = L.load_all_tool_contracts() return registry_runner(registry, rtasks, args.output_dir)
def _get_registered_tasks_and_operators(): import pbsmrtpipe.loader as L return L.load_all_tool_contracts(), L.load_all_installed_chunk_operators()
def args_runner(args): import pbsmrtpipe.loader as L rtasks = L.load_all_tool_contracts() return registry_runner(registry, rtasks, args.output_dir, emit_xml=args.with_xml)
def args_runner(args): rtasks = L.load_all_tool_contracts() return registry_runner(registry, rtasks, args.output_dir)
def _get_registered_tasks_and_operators(): import pbsmrtpipe.loader as L return L.load_all_tool_contracts(), L.load_all_installed_chunk_operators()