def _diagnose_prefixes(self):
"""Returns a set of all of the prefixes seen in the main document dir
"""
from peyotl.collections_store import COLLECTION_ID_PATTERN
p = set()
for owner_dirname in os.listdir(self.doc_dir):
example_collection_name = "{n}/xxxxx".format(n=owner_dirname)
if COLLECTION_ID_PATTERN.match(example_collection_name):
p.add(owner_dirname)
return p
def _diagnose_prefixes(self):
"""Returns a set of all of the prefixes seen in the main document dir
"""
from peyotl.collections_store import COLLECTION_ID_PATTERN
p = set()
for owner_dirname in os.listdir(self.doc_dir):
example_collection_name = "{n}/xxxxx".format(n=owner_dirname)
if COLLECTION_ID_PATTERN.match(example_collection_name):
p.add(owner_dirname)
return p
def get(self, collection_id, content=None, **kwargs):
"""Syntactic sugar around to make it easier to get fine-grained access
to the parts of a file without composing a PhyloSchema object.
Possible invocations include:
w.get('pg_10')
w.get('pg_10', 'trees')
w.get('pg_10', 'trees', format='nexus')
w.get('pg_10', tree_id='tree3')
see:
"""
assert COLLECTION_ID_PATTERN.match(collection_id)
r = self.get_collection(collection_id)
if isinstance(r, dict) and ('data' in r):
return r['data']
return r
def get(self, collection_id, content=None, **kwargs):
"""Syntactic sugar around to make it easier to get fine-grained access
to the parts of a file without composing a PhyloSchema object.
Possible invocations include:
w.get('pg_10')
w.get('pg_10', 'trees')
w.get('pg_10', 'trees', format='nexus')
w.get('pg_10', tree_id='tree3')
see:
"""
assert COLLECTION_ID_PATTERN.match(collection_id)
r = self.get_collection(collection_id)
if isinstance(r, dict) and ('data' in r):
return r['data']
return r
def get_filepath_for_id(repo_dir, collection_id):
from peyotl.collections_store import COLLECTION_ID_PATTERN
assert bool(COLLECTION_ID_PATTERN.match(collection_id))
return '{r}/collections-by-owner/{s}.json'.format(r=repo_dir,
s=collection_id)
def get_filepath_for_id(repo_dir, collection_id):
from peyotl.collections_store import COLLECTION_ID_PATTERN
assert bool(COLLECTION_ID_PATTERN.match(collection_id))
return '{r}/collections-by-owner/{s}.json'.format(r=repo_dir, s=collection_id)