def run_manual(kwik_path, clustering=None, interactive=False,
cluster_ids=None):
import phy
from phy.cluster import Session
from phy.gui import start_qt_app, run_qt_app
if not op.exists(kwik_path):
print("The file `{}` doesn't exist.".format(kwik_path))
return 1
print("\nLoading {}...".format(kwik_path))
session = Session(kwik_path,
clustering=clustering,
)
print("Data successfully loaded!\n")
session.model.describe()
start_qt_app()
gui = session.show_gui(cluster_ids=cluster_ids, show=False)
print("\nPress `ctrl+h` to see the list of keyboard shortcuts.\n")
# Interactive mode with IPython.
if interactive:
print("\nStarting IPython...")
from IPython import start_ipython
# Namespace.
ns = {'phy': phy,
'session': session,
'model': session.model,
'kwik_path': kwik_path,
'gui': gui,
}
start_ipython(["--gui=qt", "-i", "-c='gui.show()'"], user_ns=ns)
else:
gui.show()
run_qt_app()
def main(args=None):
p = ParserCreator()
if args is None:
args = sys.argv[1:]
elif isinstance(args, string_types):
args = args.split(' ')
args = p.parse(args)
if args is None:
return
if args.profiler or args.line_profiler:
from phy.utils.testing import _enable_profiler, _profile
prof = _enable_profiler(args.line_profiler)
else:
prof = None
import phy
if args.debug:
phy.debug()
# Hide the traceback.
if args.hide_traceback:
def exception_handler(exception_type, exception, traceback):
print("{}: {}".format(exception_type.__name__, exception))
sys.excepthook = exception_handler
# Activate IPython debugger.
if args.pdb:
from IPython.core import ultratb
sys.excepthook = ultratb.FormattedTB(mode='Verbose',
color_scheme='Linux',
call_pdb=1,
)
func = args.func
if func is None:
p.parser.print_help()
return
out = func(args)
if not out:
return
cmd, ns = out
if not cmd:
return
requires_qt = ns.pop('requires_qt', False)
requires_vispy = ns.pop('requires_vispy', False)
# Default variables in namespace.
ns.update(phy=phy, path=args.file)
if 'session' in ns:
ns['model'] = ns['session'].model
# Interactive mode with IPython.
if args.ipython:
print("\nStarting IPython...")
from IPython import start_ipython
args_ipy = ["-i", "-c='{}'".format(cmd)]
if requires_qt or requires_vispy:
# Activate Qt event loop integration with Qt.
args_ipy += ["--gui=qt"]
start_ipython(args_ipy, user_ns=ns)
else:
if not prof:
exec_(cmd, {}, ns)
else:
_profile(prof, cmd, {}, ns)
if requires_qt:
# Launch the Qt app.
from phy.gui import run_qt_app
run_qt_app()
elif requires_vispy:
# Launch the VisPy Qt app.
from vispy.app import use_app, run
use_app('pyqt4')
run()
def main(args=None):
p = ParserCreator()
if args is None:
args = sys.argv[1:]
elif isinstance(args, string_types):
args = args.split(' ')
args = p.parse(args)
if args is None:
return
if args.profiler or args.line_profiler:
from phy.utils.testing import _enable_profiler, _profile
prof = _enable_profiler(args.line_profiler)
else:
prof = None
import phy
if args.debug:
phy.debug()
# Hide the traceback.
if args.hide_traceback:
def exception_handler(exception_type, exception, traceback):
print("{}: {}".format(exception_type.__name__, exception))
sys.excepthook = exception_handler
# Activate IPython debugger.
if args.pdb:
from IPython.core import ultratb
sys.excepthook = ultratb.FormattedTB(
mode='Verbose',
color_scheme='Linux',
call_pdb=1,
)
func = args.func
if func is None:
p.parser.print_help()
return
out = func(args)
if not out:
return
cmd, ns = out
if not cmd:
return
requires_qt = ns.pop('requires_qt', False)
requires_vispy = ns.pop('requires_vispy', False)
# Default variables in namespace.
ns.update(phy=phy, path=args.file)
if 'session' in ns:
ns['model'] = ns['session'].model
# Interactive mode with IPython.
if args.ipython:
print("\nStarting IPython...")
from IPython import start_ipython
args_ipy = ["-i", "-c='{}'".format(cmd)]
if requires_qt or requires_vispy:
# Activate Qt event loop integration with Qt.
args_ipy += ["--gui=qt"]
start_ipython(args_ipy, user_ns=ns)
else:
if not prof:
exec_(cmd, {}, ns)
else:
_profile(prof, cmd, {}, ns)
if requires_qt:
# Launch the Qt app.
from phy.gui import run_qt_app
run_qt_app()
elif requires_vispy:
# Launch the VisPy Qt app.
from vispy.app import use_app, run
use_app('pyqt4')
run()
