def test_count_codons(self):
"""Test utils.count_codons()"""
codons = count_codons(self.record)
self.assertEqual(144, codons["GCC"])
self.assertEqual(0, codons["TAA"])
def test_count_codons_ignore_invalid(self):
invalid = seqio.read(get_file_path("invalid_codons.gbk"))
codons = count_codons(invalid)
self.assertEqual(143, codons["GCC"])
def _create_fingerprint(record):
counts = count_codons(record)
return Fingerprint(record.id, **counts)