def test_set_keys(mock_pims_session, some_patient_id_keys):
"""Add an pseudonym-identifier pair"""
connection = PIMSConnection(session=mock_pims_session)
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.
KEYFILES_PSEUDONYMS_REIDENTIFY_NON_EXISTENT_RESPONSE)
# keys need to be patientID to match mocked response above
connection.set_keys(key_file=KeyFileFactory(), keys=some_patient_id_keys)
def test_set_keys_existing_pseudonym(mock_pims_session, some_patient_id_keys):
"""Setting a pseudonym that is already used for a different identifier should
fail
"""
connection = PIMSConnection(session=mock_pims_session)
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.DEIDENTIFY_FAILED_TO_INSERT)
# keys need to be patientID to match mocked response above
with pytest.raises(PIMSServerException):
connection.set_keys(key_file=KeyFileFactory(),
keys=some_patient_id_keys)
def test_set_keys_existing_identity(mock_pims_session, some_patient_id_keys):
"""I want to add an pseudonym-identifier pair, but the identifier already
exists
"""
connection = PIMSConnection(session=mock_pims_session)
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.
KEYFILES_PSEUDONYMS_REIDENTIFY_EXISTENT_RESPONSE)
# keys need to be patientID to match mocked response above
with pytest.raises(PIMSServerException):
connection.set_keys(key_file=KeyFileFactory(),
keys=some_patient_id_keys)
def test_deidentify(mock_pims_session):
connection = PIMSConnection(session=mock_pims_session)
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.DEIDENTIFY_CREATE_JSONOUTPUT_TRUE)
identifiers = [IdentifierFactory(), IdentifierFactory()]
keys = connection.pseudonymize(key_file=KeyFileFactory(),
identifiers=identifiers)
assert len(keys) == 2
assert str(keys[0].identifier) == str(identifiers[0])
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.DEIDENTIFY_CREATE_JSONOUTPUT_TRUE_INVALID)
with pytest.raises(PIMSSwaggerException) as e:
connection.pseudonymize(key_file=KeyFileFactory(),
identifiers=identifiers)
def mock_project_requests(requests_mock):
"""Mock project that simulates actual requests.post calls. Will
raise PIMSServerException for invalid return values, but allows checking what
is sent to server
"""
mock_session = Mock()
project = Project(
key_file_id=1,
connection=PIMSConnection(
session=PIMSSession(mock_session, base_url="/test")),
)
project.get_key_file = lambda: KeyFileFactory() # make sure this passes
return project
def test_pimsconnection(mock_pims_session):
connection = PIMSConnection(session=mock_pims_session)
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.DEIDENTIFY_CREATE_JSONOUTPUT_TRUE)
connection.pseudonymize(key_file=KeyFileFactory(),
identifiers=[IdentifierFactory()])
mock_pims_session.session.set_response_tuple(
RequestsMockResponseExamples.KEYFILES_PSEUDONYMS_REIDENTIFY_RESPONSE)
connection.reidentify(key_file=KeyFileFactory(),
pseudonyms=[PseudonymFactory()])