def reverse( self, clone = True ):
#need to override how color space is reversed
if clone:
rval = self.clone()
else:
rval = self
if rval.has_adapter_base():
adapter = rval.sequence[0]
#sequence = rval.sequence[1:]
rval.sequence = self.color_space_converter.to_color_space( transform.reverse( self.color_space_converter.to_base_space( rval.sequence ) ), adapter_base = adapter )
else:
rval.sequence = transform.reverse( rval.sequence )
if rval.is_ascii_encoded():
rval.quality = rval.quality[::-1]
else:
rval.quality = reversed( rval.get_decimal_quality_scores() )
rval.quality = "%s " % " ".join( map( str, rval.quality ) )
return rval
def reverse(self, clone=True):
#need to override how color space is reversed
if clone:
rval = self.clone()
else:
rval = self
if rval.has_adapter_base():
adapter = rval.sequence[0]
#sequence = rval.sequence[1:]
rval.sequence = self.color_space_converter.to_color_space(
transform.reverse(
self.color_space_converter.to_base_space(rval.sequence)),
adapter_base=adapter)
else:
rval.sequence = transform.reverse(rval.sequence)
if rval.is_ascii_encoded():
rval.quality = rval.quality[::-1]
else:
rval.quality = reversed(rval.get_decimal_quality_scores())
rval.quality = "%s " % " ".join(map(str, rval.quality))
return rval
def reverse( self, clone = True ):
#need to override how decimal quality scores are reversed
if clone:
rval = self.clone()
else:
rval = self
rval.sequence = transform.reverse( self.sequence )
if rval.is_ascii_encoded():
rval.quality = rval.quality[::-1]
else:
rval.quality = reversed( rval.get_decimal_quality_scores() )
rval.quality = "%s " % " ".join( map( str, rval.quality ) )
return rval
def reverse(self, clone=True):
#need to override how decimal quality scores are reversed
if clone:
rval = self.clone()
else:
rval = self
rval.sequence = transform.reverse(self.sequence)
if rval.is_ascii_encoded():
rval.quality = rval.quality[::-1]
else:
rval.quality = reversed(rval.get_decimal_quality_scores())
rval.quality = "%s " % " ".join(map(str, rval.quality))
return rval
