def init_frame2(self):
# =============================================================================================================
# Frame 2 #
# =============================================================================================================
run_frame2 = tkinter.Frame(self.plant_segapp)
run_config = self.app_config["run_frame"]
self.config_row_column(run_frame2, run_config)
run_frame2.grid(row=int(run_config["row"]),
column=int(run_config["column"]),
sticky=self.stick_all)
run_frame2["highlightthickness"] = run_config["highlightthickness"]
run_frame2["bg"] = run_config["bg"]
x = tkinter.Button(run_frame2, bg=convert_rgb(self.app_config["green"]),
text="Add Custom Model", font=self.font_bold)
x.grid(column=3, row=0, padx=10, pady=10, sticky=self.stick_all)
x["command"] = self.load_custom_model
x = tkinter.Button(run_frame2, bg=convert_rgb(self.app_config["green"]),
text="PlantSeg Introduction", font=self.font_bold)
x.grid(column=4, row=0, padx=10, pady=10, sticky=self.stick_all)
x["command"] = self.open_documentation_index
x = tkinter.Button(run_frame2, bg=convert_rgb(self.app_config["green"]),
text="Reset Parameters", font=self.font_bold)
x.grid(column=5, row=0, padx=10, pady=10, sticky=self.stick_all)
x["command"] = self.reset_config
self.run_button = tkinter.Button(run_frame2, bg=convert_rgb(self.app_config["green"]),
text="Run", command=self._run, font=self.font_bold)
self.run_button.grid(column=6, row=0, padx=10, pady=10, sticky=self.stick_all)
self.run_frame2 = run_frame2
def rescale_button_widget(self):
self.list_entry = ListEntry(
self.popup,
"Input your data resolution (zxy \u03BCm): ",
row=1,
column=0,
type=float,
font=self.font)
self.list_entry(self.net_resolution, [])
self.scale_factor = []
popup_button = tkinter.Frame(self.popup)
popup_button.configure(bg="white")
tkinter.Grid.rowconfigure(popup_button, 0, weight=1)
tkinter.Grid.columnconfigure(popup_button, 0, weight=1)
popup_button.grid(row=2, column=0, sticky=stick_all)
button = tkinter.Button(popup_button,
bg=convert_rgb(PLANTSEG_GREEN),
text="Compute Rescaling Factor",
command=self.update_input_resolution,
font=self.font)
button.grid(column=0, row=0, padx=10, pady=10, sticky=stick_all)
search_button_frame = tkinter.Frame(self.popup)
search_button_frame.configure(bg="white")
tkinter.Grid.rowconfigure(search_button_frame, 0, weight=1)
tkinter.Grid.columnconfigure(search_button_frame, 0, weight=1)
search_button_frame.grid(row=3, column=0, sticky=stick_all)
text = "or import resolution from file"
label0 = tkinter.Label(search_button_frame,
bg="white",
text=text,
font=self.font)
label0.grid(column=0, row=0, padx=10, pady=10, sticky=stick_all)
search_button = tkinter.Button(
search_button_frame,
bg=convert_rgb(PLANTSEG_GREEN),
text="Compute Rescaling Factor From File",
command=self.read_from_file,
font=self.font)
search_button.grid(column=0, row=1, padx=10, pady=10, sticky=stick_all)
text = "N.B. Rescaling input data to the training data resolution has shown to be very helpful in some cases" \
" and detrimental in others."
label1 = tkinter.Label(search_button_frame,
bg="white",
text=text,
font=self.font)
label1.grid(column=0, row=2, padx=10, pady=10, sticky=stick_all)
def __call__(self, value, obj_collection):
global current_segmentation
label1 = tkinter.Label(self.frame,
bg=self.style["bg"],
text=self.text,
anchor="w",
font=self.font)
label1.grid(column=0,
row=0,
padx=self.style["padx"],
pady=self.style["pady"],
sticky=tkinter.W)
entry1 = tkinter.Scale(self.frame,
from_=self.min,
to=self.max,
resolution=self.interval,
orient=tkinter.HORIZONTAL,
font=self.font)
entry1.configure(bg="white")
entry1.configure(troughcolor=convert_rgb(PLANTSEG_GREEN))
entry1.configure(length=200)
entry1.set(self.type(value))
entry1.grid(column=1,
row=0,
padx=self.style["padx"],
pady=self.style["pady"],
sticky=tkinter.E)
self.tk_value = entry1
obj_collection.append(label1)
obj_collection.append(entry1)
return obj_collection
def place_module(self, module_name):
self.checkbox = tkinter.Checkbutton(self.frame,
bg=convert_rgb((208, 240, 192)),
text=module_name,
font=self.font)
self.checkbox.grid(column=0,
row=0,
padx=self.style["padx"],
pady=self.style["pady"],
sticky=stick_all)
def load_model_button(self):
popup_load = tkinter.Frame(self.popup)
tkinter.Grid.rowconfigure(popup_load, 0, weight=1)
tkinter.Grid.rowconfigure(popup_load, 1, weight=3)
tkinter.Grid.rowconfigure(popup_load, 2, weight=1)
tkinter.Grid.columnconfigure(popup_load, 0, weight=1)
popup_load.grid(row=1, column=0, sticky=stick_all)
popup_load.configure(bg="white")
self.file_dialog_frame(popup_load, row=0, column=0)
self.simple_entry1 = SimpleEntry(popup_load,
"Model Name: ",
large_bar=True,
row=1,
column=0,
_type=str,
_font=self.font)
self.simple_entry1("custom_net", [])
self.list_entry = ListEntry(
popup_load,
"Input your training data resolution (zxy \u03BCm): ",
row=2,
column=0,
type=float,
font=self.font)
self.list_entry([1., 1., 1.], [])
self.simple_entry2 = SimpleEntry(popup_load,
"Description: ",
large_bar=True,
row=3,
column=0,
_type=str,
_font=self.font)
self.simple_entry2("", [])
button = tkinter.Button(
popup_load,
bg=convert_rgb(PLANTSEG_GREEN),
text="Add Model Directory (This will restart PlantSeg,"
" all changes not saved will be deleted)",
command=self.load_model,
font=self.font)
button.grid(column=0, row=4, padx=10, pady=10, sticky=stick_all)
def _show_options(self, config, module):
if self.show.get():
self.checkbox["bg"] = convert_rgb((208, 240, 192))
for i, (key, value) in enumerate(config[module].items()):
if key in self.custom_key:
self.obj_collection = self.custom_key[key](
value, self.obj_collection)
else:
self.checkbox["bg"] = "white"
self.update_config(config, module)
for obj in self.obj_collection:
obj.grid_forget()
return config
def build_menu(self):
menubar = tkinter.Menu(self.plant_segapp)
menubar["bg"] = convert_rgb(self.app_config["green"])
filemenu = tkinter.Menu(menubar, tearoff=0)
filemenu["bg"] = "white"
filemenu.add_command(label="Open", command=self.open_config, font=self.font)
filemenu.add_command(label="Save", command=self.save_config, font=self.font)
filemenu.add_separator()
filemenu.add_command(label="Restart", command=self.restart_program, font=self.font)
filemenu.add_separator()
filemenu.add_command(label="Exit", command=self.close, font=self.font)
menubar.add_cascade(label="File", menu=filemenu, font=self.font)
preferencesmenu = tkinter.Menu(menubar, tearoff=0)
preferencesmenu["bg"] = "white"
preferencesmenu.add_command(label="Font Size +", command=self.size_up, font=self.font)
preferencesmenu.add_command(label="Font Size -", command=self.size_down, font=self.font)
menubar.add_cascade(label="Preferences", menu=preferencesmenu, font=self.font)
editmenu = tkinter.Menu(menubar, tearoff=0)
editmenu["bg"] = "white"
editmenu.add_command(label="Add Model", command=self.load_custom_model, font=self.font)
editmenu.add_command(label="Remove Model", command=self.remove_model, font=self.font)
menubar.add_cascade(label="Edit", menu=editmenu, font=self.font)
helpmenu = tkinter.Menu(menubar, tearoff=0)
helpmenu.add_command(label="PlantSeg Overview",
command=self.open_documentation_index, font=self.font)
helpmenu.add_command(label="Data Pre-Processing",
command=self.open_documentation_preprocessing, font=self.font)
helpmenu.add_command(label="CNN Predictions",
command=self.open_documentation_3dunet, font=self.font)
helpmenu.add_command(label="Segmentation",
command=self.open_documentation_segmentation, font=self.font)
helpmenu.add_command(label="Data Post-Processing",
command=self.open_documentation_preprocessing, font=self.font)
helpmenu.add_separator()
helpmenu.add_command(label="About...", command=version_popup, font=self.font)
helpmenu["bg"] = "white"
menubar.add_cascade(label="Help", menu=helpmenu, font=self.font)
self.plant_segapp.config(menu=menubar)
def report_error(data, font=None, depth=3):
""" creates pop up and show error messages """
data = data if type(data) is str else f"Unknown Error. Error type: {type(data)} \n {data}"
# reduce message depth
data = '\n' + ''.join([f"{_str} \n" for _str in data.split('\n')[-depth:]])
default = "The complete error message is reported in the terminal." \
" If the error persists, please let us know by opening an issue on" \
" https://github.com/hci-unihd/plant-seg."
popup = tkinter.Tk()
popup.title("Error")
popup["bg"] = "white"
tkinter.Grid.rowconfigure(popup, 0, weight=1)
tkinter.Grid.rowconfigure(popup, 1, weight=2)
tkinter.Grid.columnconfigure(popup, 0, weight=1)
x = tkinter.Label(popup, bg="white", text=default, font=font)
x.grid(column=0, row=0, padx=10, pady=10, sticky=stick_all)
x = tkinter.Label(popup, bg=convert_rgb((240, 192, 208)), text=data, font=font)
x.grid(column=0, row=1, padx=10, pady=10, sticky=stick_all)