def determineCollapsedNodes(tipsToCollapse, keepVisibleNodeIds, renderInfo,
collapsedNodeInfo):
for id in reversed(renderInfo.collapseOrder.ids):
nodeInfo = renderInfo.nodeInfo[id]
if (id not in keepVisibleNodeIds):
toCollapse = True
for colNode in collapsedNodeInfo:
if (colNode['nodeId'] == id):
toCollapse = False
break
if (util.isAncestor(
Storage(next=colNode['next'], back=colNode['back']),
Storage(next=nodeInfo['next'],
back=nodeInfo['back']))):
toCollapse = False
break
if (toCollapse):
tipsAlreadyCollapsedByDescendants = 0
for colNode in collapsedNodeInfo:
if (util.isDescendant(
Storage(next=colNode['next'],
back=colNode['back']),
Storage(next=nodeInfo['next'],
back=nodeInfo['back']))):
tipsAlreadyCollapsedByDescendants += colNode[
'descendantTipCount']
collapsedNodeInfo.remove(colNode)
tipsToCollapse = tipsToCollapse - nodeInfo[
'descendantTipCount'] + tipsAlreadyCollapsedByDescendants
collapsedNodeInfo.append(nodeInfo)
if (tipsAlreadyCollapsedByDescendants == 0):
tipsToCollapse += 1
if (tipsToCollapse <= 0):
break
def replaceClade(db, session, request, auth):
replacedNodeId = int(request.vars.replacedNodeId)
replacingNodeId = int(request.vars.replacingNodeId)
columnIndex = int(request.vars.columnIndex)
treeState = session.TreeViewer.treeState[session.TreeViewer.treeType][
session.TreeViewer.treeId]
columnInfo = treeState.columns[columnIndex]
replacedCladeRow = db(
db[session.TreeViewer.strNodeTable].id == replacedNodeId).select()[0]
tree = getattr(build, ''.join([session.TreeViewer.treeType,
'Clade']))(db,
treeState.columns[0].rootNodeId,
Storage())
replacingClade = getattr(
build, ''.join([request.vars.replacingNodeTreeType,
'Clade']))(db, replacingNodeId, Storage())
graftUtil.replaceClade(tree, replacedNodeId, replacingClade)
if (session.TreeViewer.treeType == 'grafted'):
for (collapsedNodeId,
collapsedNodeData) in columnInfo.collapsedNodeStorage.items():
if (util.isAncestor(replacedCladeRow, collapsedNodeData)):
del columnInfo.collapsedNodeStorage[collapsedNodeId]
if( ( ( len( treeState.columns ) - 1 ) > columnIndex ) and \
( collapsedNodeId == treeState.columns[ columnIndex + 1 ].rootNodeId ) ):
while ((len(treeState.columns) - 1) > columnIndex):
treeState.columns.pop()
graftUtil.postReplaceDBUpdate(db, session, request, auth, tree,
replacedCladeRow, replacingClade)
return dict()
def determineCollapsedNodes(session, renderInfo, tipsToCollapse, columnInfo):
formerlyCollapsedNodeStorage = session.TreeViewer.treeState[
session.TreeViewer.treeType][
session.TreeViewer.treeId].formerlyCollapsedNodeStorage
nodesToCollapseStorage = Storage()
for id in reversed(renderInfo.collapseOrder.ids):
nodeInfo = renderInfo.nodeInfo[id]
if (id not in columnInfo.keepVisibleNodeStorage):
toCollapse = True
combined = dict(columnInfo.collapsedNodeStorage.items() +
nodesToCollapseStorage.items())
for (nodeId, collapsedNodeData) in combined.items():
if (nodeId == id):
toCollapse = False
break
if (util.isAncestor(collapsedNodeData, nodeInfo)):
toCollapse = False
break
if (toCollapse):
tipsAlreadyCollapsedByDescendants = 0
for (nodeId, collapsedNodeData
) in columnInfo.collapsedNodeStorage.items():
if (util.isDescendant(
Storage(next=collapsedNodeData['next'],
back=collapsedNodeData['back']),
Storage(next=nodeInfo['next'],
back=nodeInfo['back']))):
tipsAlreadyCollapsedByDescendants += collapsedNodeData[
'descendantTipCount']
if nodeId not in formerlyCollapsedNodeStorage:
formerlyCollapsedNodeStorage[
nodeId] = columnInfo.collapsedNodeStorage[
nodeId]
del columnInfo.collapsedNodeStorage[nodeId]
tipsToCollapse = tipsToCollapse - nodeInfo[
'descendantTipCount'] + tipsAlreadyCollapsedByDescendants
for (nodeId,
collapsedNodeData) in nodesToCollapseStorage.items():
if (util.isDescendant(
Storage(next=collapsedNodeData['next'],
back=collapsedNodeData['back']),
Storage(next=nodeInfo['next'],
back=nodeInfo['back']))):
del nodesToCollapseStorage[nodeId]
nodesToCollapseStorage[id] = nodeInfo
if (tipsAlreadyCollapsedByDescendants == 0):
tipsToCollapse += 1
if (tipsToCollapse <= 0):
break
return nodesToCollapseStorage