def __init__(self, source, dest, species, interactions, subject,
min_spp, min_ints):
species_dict = hash_linnaeus_file(species)
interacts_dict = hash_linnaeus_file(interactions)
#subject = os.path.basename(source)
sys.stderr.write("writing output from %s to %s...\n" % (source, dest))
f = codecs.open(dest, "a", "utf8")
for article in os.listdir(source):
p = ProcessedArticle(os.path.join(source, article))
out = ArticleInteractions(p, species_dict, interacts_dict, min_spp, min_ints)
if out.tagged_sentences:
sys.stderr.write("...writing %s..." % p.file_name)
f.writelines([subject + "\t" + line for line in out.flat_output])
f.close()
sys.stderr.write("\nDone.\n")
def processDirectory(self, data_path, pure_path, subjects, inter_tag_path):
""" Apply process to a directory of interaction tagfiles"""
processDict = {}
for subject in subjects:
sys.stderr.write("Locating %s interaction terms...\n" % subject)
interDict = hash_linnaeus_file(os.path.join(inter_tag_path,
subject + "_interactions.tsv"))
processDict[subject] = self.process(interDict, data_path, pure_path, subject)
return(processDict)
