def __init__(self, stimulus, hrf_model, normalizer=utils.percent_change, cached_model_path=None, nuisance=None):
r"""A 2D Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Dumoulin SO, Wandell BA. (2008) Population receptive field
estimates in human visual cortex. NeuroImage 39:647-660
"""
PopulationModel.__init__(self, stimulus, hrf_model, normalizer)
def __init__(self, stimulus, hrf_model):
r"""A 1D Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `AuditoryStimulus` class object
A class instantiation of the `AuditoryStimulus` class
containing a representation of the auditory stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Thomas JM, Huber E, Stecker GC, Boynton GM, Saenz M, Fine I. (2015)
Population receptive field estimates in human auditory cortex.
NeuroImage 105, 428-439.
"""
# invoke the base class
PopulationModel.__init__(self, stimulus, hrf_model)
def __init__(self, stimulus, hrf_model, normalizer=utils.percent_change):
r"""A 2D Gaussian population receptive field model [1]_,[2]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Dumoulin SO, Wandell BA. (2008) Population receptive field
estimates in human visual cortex. NeuroImage 39:647-660
.. [2] DeSimone K, Viviano JD, Schneider KA (2015) Population receptive
field estimation reveals new maps in human subcortex. Journal of
Neuroscience 35: 9836-9847. doi:10.1523/jneurosci.3840-14.2015
"""
PopulationModel.__init__(self, stimulus, hrf_model, normalizer)
def __init__(self, stimulus, hrf_model):
r"""A 1D Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `AuditoryStimulus` class object
A class instantiation of the `AuditoryStimulus` class
containing a representation of the auditory stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Thomas JM, Huber E, Stecker GC, Boynton GM, Saenz M, Fine I. (2015)
Population receptive field estimates in human auditory cortex.
NeuroImage 105, 428-439.
"""
# invoke the base class
PopulationModel.__init__(self, stimulus, hrf_model)
def __init__(self,
stimulus,
hrf_model,
cached_model_path=None,
nuisance=None):
PopulationModel.__init__(self, stimulus, hrf_model, nuisance)
def __init__(self, stimulus, hrf_model, nuisance=None):
r"""A 2D Gaussian population receptive field model [1]_,[2]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Dumoulin SO, Wandell BA. (2008) Population receptive field
estimates in human visual cortex. NeuroImage 39:647-660
.. [2] DeSimone K, Viviano JD, Schneider KA (2015) Population receptive
field estimation reveals new maps in human subcortex. Journal of
Neuroscience 35: 9836-9847. doi:10.1523/jneurosci.3840-14.2015
"""
PopulationModel.__init__(self, stimulus, hrf_model, nuisance)
def __init__(self, stimulus, hrf_model, nuisance=None):
r"""A 2D Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Dumoulin SO, Wandell BA. (2008) Population receptive field
estimates in human visual cortex. NeuroImage 39:647-660
"""
PopulationModel.__init__(self, stimulus, hrf_model, nuisance)
def __init__(self, stimulus, hrf_model, normalizer=utils.percent_change, cached_model_path=None, nuisance=None):
r"""
A Difference of Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Zuiderbaan W, Harvey BM, Dumoulin SO (2012) Modeling
center-surroundconfigurations in population receptive fields
using fMRI. Journal of Vision 12(3):10,1-15.
"""
PopulationModel.__init__(self, stimulus, hrf_model, normalizer)
def __init__(self, stimulus, hrf_model, nuisance=None):
r"""
A Compressive Spatial Summation population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Kay KN, Winawer J, Mezer A, Wandell BA (2014) Compressive spatial
summation in human visual cortex. Journal of Neurophysiology 110:481-494.
"""
PopulationModel.__init__(self, stimulus, hrf_model, nuisance)
def __init__(self,
stimulus,
hrf,
cached_model_path=None,
nuisance=None,
nr_TRs=103):
PopulationModel.__init__(self, stimulus, hrf, nuisance, nr_TRs)
def __init__(self, stimulus, hrf_model):
"""
A spatiotemporal population receptive field model.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
"""
PopulationModel.__init__(self, stimulus, hrf_model)
def __init__(self, stimulus, hrf_model):
"""
A spatiotemporal population receptive field model.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
"""
PopulationModel.__init__(self, stimulus, hrf_model)
def __init__(self,
stimulus,
hrf_model,
cached_model_path=None,
nuisance=None,
sg_filter_window_length=120,
sg_filter_polyorder=3,
sg_filter_deriv=0,
tr=1.5):
PopulationModel.__init__(self, stimulus, hrf_model, nuisance)
# sg filter
self.sg_filter_window = np.int(sg_filter_window_length / tr)
if self.sg_filter_window % 2 == 0:
self.sg_filter_window += 1
self.sg_filter_polyorder = sg_filter_polyorder
self.sg_filter_deriv = sg_filter_deriv
def __init__(self,
stimulus,
hrf_model,
cached_model_path=None,
nuisance=None,
sg_filter_window_length=120,
sg_filter_order=3,
tr=1.5):
r"""
A Compressive Spatial Summation population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Kay KN, Winawer J, Mezer A, Wandell BA (2014) Compressive spatial
summation in human visual cortex. Journal of Neurophysiology 110:481-494.
"""
PopulationModel.__init__(self, stimulus, hrf_model, cached_model_path,
nuisance)
self.window = np.int(sg_filter_window_length / tr)
# Window must be odd
if self.window % 2 == 0:
self.window += 1
self.sg_filter_order = sg_filter_order
def __init__(self, stimulus):
"""
A Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
References
----------
.. [1] Dumoulin SO, Wandell BA. (2008) Population receptive field
estimates in human visual cortex. NeuroImage 39:647-660
"""
PopulationModel.__init__(self, stimulus)
def __init__(self, stimulus, hrf_model):
r"""
A Difference of Gaussian population receptive field model [1]_.
Paramaters
----------
stimulus : `VisualStimulus` class object
A class instantiation of the `VisualStimulus` class
containing a representation of the visual stimulus.
hrf_model : callable
A function that generates an HRF model given an HRF delay.
For more information, see `popeye.utilties.double_gamma_hrf_hrf`
References
----------
.. [1] Zuiderbaan W, Harvey BM, Dumoulin SO (2012) Modeling
center-surroundconfigurations in population receptive fields
using fMRI. Journal of Vision 12(3):10,1-15.
"""
PopulationModel.__init__(self, stimulus, hrf_model)
def __init__(self, stimulus):
# this is a weird notation
PopulationModel.__init__(self, stimulus)
def __init__(self, stimulus):
# this is a weird notation
PopulationModel.__init__(self, stimulus)