def _defineAlignParams(self, form):
SpiderProtAlign._defineAlignParams(self, form)
# Hide the center of gravity option from the GUI since it is not
# used in this particular alignment method
cgOption = form.getParam('cgOption')
cgOption.config(condition='False')
form.addParallelSection(threads=0, mpi=0)
def _defineAlignParams(self, form):
SpiderProtAlign._defineAlignParams(self, form)
# Hide the center of gravity option from the GUI since it is not
# used in this particular alignment method
cgOption = form.getParam('cgOption')
cgOption.config(condition='False')
form.addParallelSection(threads=1, mpi=0)
def _defineAlignParams(self, form):
SpiderProtAlign._defineAlignParams(self, form)
form.addParam('searchRange', IntParam, default=8,
label='Search range (px):',
help='In the translational alignment, shifts of up to\n'
'_searchRange_ (in pixel units) will be allowed.')
form.addParam('stepSize', IntParam, default=2,
label='Step size (px):',
help='Alignments will be evaluated in units of _stepSize_ \n'
'(in pixel units) up to a maximum of +/- _searchRange_.')
form.addParallelSection(threads=2, mpi=0)
def _defineAlignParams(self, form):
SpiderProtAlign._defineAlignParams(self, form)
form.addParallelSection(threads=0, mpi=0)
def __init__(self, **args):
SpiderProtAlign.__init__(self, 'mda/apsr4class.msa', 'apsr', **args)
def __init__(self, **args):
SpiderProtAlign.__init__(self, 'mda/apsr4class.msa', 'apsr', **args)
def __init__(self, **args):
SpiderProtAlign.__init__(self, 'mda/pairwise.msa', 'pairwise', **args)
def __init__(self, **args):
SpiderProtAlign.__init__(self, "mda/apsr4class.msa", "apsr", **args)
